| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1251 |
|---|
| Symbol | |
|---|
| ID | 9137945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 1603598 |
|---|
| End bp | 1604422 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003629284 |
|---|
| Protein GI | 296121506 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.725023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAATTC TCTCAGCCGT CACGATCAGC CTGGTCGAAG AAGCACGCGG CGGCCCCTTC
GTGTTCTGGG ATGATGTCGA GGCCAGTTGC CAGGTCGCGA GTGAACTGGG CTTTGATGCC
GTCGAACTCT TTGCTCCCGA ACCAGGCTTT GTCCCTGTCA AAACCTTCAA AGAAATCCTC
TCGCGATACA ATCTCAAGCT GGCAGCTGTC GGAACAGGGG CCGGCTGGCT TAAAAAGCAG
CTTTCACTGA CCAGCCCAAA TGCGGAAATC CGTCAGGCCG CCAAAAAATT CATCACCAGT
ATGATTGAAT ATGGTGGCCA GTTGGGTGCC CCGGCGATCA TTGGCTCCAT GCAGGGAAAA
GCCGCCTCGT CTGCTTCGAT TGCTGAGTGC CGGATGTTGC TGGGTGAAGC CCTGGCGGAA
CTTTGTCATC ACAGCCATAG CCGATTCGGC CTGCCGCTGA TCTACGAACC GCTCAATCGT
TACGAAACCA ATCTCTGCAA TACTCAAGGA GATGGTGCTC ATCTTCTACA GACTTATGGT
GCCCCGGACT GCAAACTTCT GGCCGACCTG TTCCACATGA ACATCGAAGA AATCAACATC
ACGCAAGGGC TGCTCGATGG AGGCTCATGG ATCGGCCACA TCCATTATGT CGATTCCAAT
CGGAATGCGG CTGGAATGGG CCACATTGAC TTTGCCCAGG TGATCGCGAC ATTAAAACAG
ATTAACTACG AGGGTTATCT TTCGGCAGAA GCCCGCAGCC TCCCAGATGC GAGGACAGCC
GCCCAAGCGA CCATCGACAG TATCCGCCAG CATCTCGGCA AATAG
|
|---|
| Protein sequence | MPILSAVTIS LVEEARGGPF VFWDDVEASC QVASELGFDA VELFAPEPGF VPVKTFKEIL
SRYNLKLAAV GTGAGWLKKQ LSLTSPNAEI RQAAKKFITS MIEYGGQLGA PAIIGSMQGK
AASSASIAEC RMLLGEALAE LCHHSHSRFG LPLIYEPLNR YETNLCNTQG DGAHLLQTYG
APDCKLLADL FHMNIEEINI TQGLLDGGSW IGHIHYVDSN RNAAGMGHID FAQVIATLKQ
INYEGYLSAE ARSLPDARTA AQATIDSIRQ HLGK
|
|---|
| |