| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0989 |
|---|
| Symbol | |
|---|
| ID | 9137675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 1253111 |
|---|
| End bp | 1255711 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | P4 alpha zinc-binding domain protein |
|---|
| Protein accession | YP_003629031 |
|---|
| Protein GI | 296121253 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATC CTTCCCAGTC TCTCGATGCG AACGAAATCA AAGCAGCGGC CCGTGGCCAA
TGGGAGATGA TCCTCTCTAC GGTTGGCGGA ATTGATAGTG CTCTCCTCGA TGGCAAACAT
CATCCCTGCC CGAAGTGTGG GGGCACAGAT CGATTCAGAA TGCTGGATGC TGACGCCGGT
TCGTTGTACT GCAATCAATG CTTCAATGAA CGAAATGGCG ATGGGCTGGC GGCTGTTCAA
TGGTTGCGGG GGTGCGATTT CCCTGAAGCT CTCCGGCTCG TGGCCGATGA ACTCCGGCTG
AACACTGGCC AGCCATCGGC AAAGCGGGAA CCGATCTCCC GGCCAGTAAA GCCCATGGCC
GAACCGCCGG ACTTCGATTC CAAAGTGGAA CGGTTCGACA ATCCCGAAGC ACTCTTCGAT
GAATACCTGG CGGCAGTCGG CCCGGCCACG CTTCAAAGTC TGCGGGATGC GGCGGCCTGT
TCGGTCTGGT GGCCAGCCAC GGGGAATCAT CGTCAACGGT GCCTTTTGCT CCCAGCCACG
CTTCCGGGTG GCCAGCGGCC CGTCGGGGTG ATCCTGCGGC GAGTGGACGG GAAACCCTTC
CCGGCCATCC CGAACGGCCT TCCCGAGCGG AAAACGCACA CGGTGGGCGG CTCACGCGAT
GGCTGGGTGG TGATCGGGGG CTGGCAACGC TTTGCCGAAG CTCGCATCGT CTGGAAGTGT
GAAGGGGTGC CCGATGCTTT GGCCCTGGCA AAACATCTGC CAGCGGGGCA TATCGCTTTC
ACAAACATTT GCGGCTGTAA GCCGATTCCC GATGAACTCC CTGATTTTGG CGGGAAGGAA
CTCCGGGTGA TCGGCGATTC TGACGAACCG GGACAAACTG GTGCCCGGAA GTTCGCCGAG
CGTGTCGCCA CGGTTCAGCA GACGGCCACA ATCAAACTGC TGCCCGCTCT GCATGAAGTG
ACTCCCACGC ATGGGCTGGA CTTGCGGGAC TTTTTCAAAG AGGGGGGCAC ACTGGAAGGG
TTGGAAGCCC TGGCGGCCAA TGCCGAACAG ATCGAACCCG CCGGAAATGA GATTTCAAAC
GGGGCAGGGA CTTTTGTAGA CAACAAAAGC CTATTGATCG AACCGTTTCG TGAATTCCCC
GTGGAGGCAC TTCCGCATCC TGTGCGGGGG TTCGTCCTGA CGGCGGCGGC GGCTTTGGGG
TGCGATCCAT CATTCATCGC ACTGCCGCTA CTCGTGGCCT GTGCGGCGGC CATTGGAAAC
ACTCGCCGAT TGCAGATGCG ACGCGGTTGG ACGGAACCGG CCATCCTGTG GGGAATCATC
GTCGGGTTTT CCGGGGAAGC GAAAACCCCG GCCCTCGAAA TTGCCCTGCG AGCAATCAAG
GAAAGGCAAC GAACTGCGGT TCGAGAATGG CAAAGCCTGA TGCGGGACTA TGAAGCCCAG
CTACCGGCCT ATCGCCGGGA CTTGAAGGAT TTCGAAAAAG GGAAGTTGAA GGAAGCTCCC
GTTGAACCCG TGGAACCGGC CTGTAAACAA CTCCTGACAT CGGATGCCAC GATTGAGGCT
CTCGCCGGGT TGCTGGTCGA TCAACCACGC GGAATGCTCG TGGCAGTCGA TGAGCTCGCC
GGATGGTTTG CCAGTCATGA ACGCTATTCA AGCGGCGATT CATCCGCGCC ATGGCTGGAA
CTCTTCGGGG GGCACTCCCT GACGATCAAC CGGAAGACGG GGCAGAAGCG GCTCTATATT
CCGAACGCAT CCGTTTCAAT CATTGGCGGA ATTCAACCCT TCACACTCAA ACAGCATCTA
ACATCGAAGC ATCGCGCTAG TGGAATGGCG GCCCGTTTCC TGATGACCAT GCCACCACGC
CGCAAGCTGG AATGGACTGA GTGTGAAATT CCTGATGAAC TCTTCGATGC GATGAAGGGA
CTATTCAACC GACTCCTGGC CCTTGAACCC GAACCGCCGG AAGGGGAGTT CGATGAACCA
CGGGCGAAAC TGCTGCGGTT TGATGCGGCG GCGAAGTCTC GATTCATTCA GTTTCACGAT
CTGCACGCCA GCGAACAAAG AGAACTCGAT TCGGAACTGG CGGCCAGTTG GTCGAAGCTG
CGGGCATACG CGGGGCGGCT GGCCATCGTG ATTCATGGCA TTCGATGGGC GAACGGGGAG
ATTGCTCCCG AACGGGAATT GATTGTCGAT GCTGAGACGG TCGATGCGGC GGTTCGCCTG
GTGGAATGGT TCGGCAATGA AACCCGCCGG GTCTATGCCA CGCTCCGGGA AACTGAAGGA
CAAGCGGAGA TGCGGGACTT CCTCGATTGG CTGGTTCAAC GGGGCGGGGA AATCACGCCA
CGCGAACTGG TTCAATCCCG ACGCCAGTTC AAAGATGTGA GCGAAGCCCG AACCTATCTT
TCGGGGCTGG AAGCTCTGGG GTATGGATCA TGGCGGGAGG CATGCTCCGG CGGACGACCG
AAGCGGACTT TTGTTCTCTC GCCGCAATAT CAGCGGAATA CTTTTGTAGA CAACGAAAGC
CTGAATGCGT TTCCAATTTC GCTGGGTGAT CGGTTCATCG ATGAAAACGA ACTGGCGGCC
ATCCATGCGG ACTTCGATTG A
|
|---|
| Protein sequence | MNHPSQSLDA NEIKAAARGQ WEMILSTVGG IDSALLDGKH HPCPKCGGTD RFRMLDADAG
SLYCNQCFNE RNGDGLAAVQ WLRGCDFPEA LRLVADELRL NTGQPSAKRE PISRPVKPMA
EPPDFDSKVE RFDNPEALFD EYLAAVGPAT LQSLRDAAAC SVWWPATGNH RQRCLLLPAT
LPGGQRPVGV ILRRVDGKPF PAIPNGLPER KTHTVGGSRD GWVVIGGWQR FAEARIVWKC
EGVPDALALA KHLPAGHIAF TNICGCKPIP DELPDFGGKE LRVIGDSDEP GQTGARKFAE
RVATVQQTAT IKLLPALHEV TPTHGLDLRD FFKEGGTLEG LEALAANAEQ IEPAGNEISN
GAGTFVDNKS LLIEPFREFP VEALPHPVRG FVLTAAAALG CDPSFIALPL LVACAAAIGN
TRRLQMRRGW TEPAILWGII VGFSGEAKTP ALEIALRAIK ERQRTAVREW QSLMRDYEAQ
LPAYRRDLKD FEKGKLKEAP VEPVEPACKQ LLTSDATIEA LAGLLVDQPR GMLVAVDELA
GWFASHERYS SGDSSAPWLE LFGGHSLTIN RKTGQKRLYI PNASVSIIGG IQPFTLKQHL
TSKHRASGMA ARFLMTMPPR RKLEWTECEI PDELFDAMKG LFNRLLALEP EPPEGEFDEP
RAKLLRFDAA AKSRFIQFHD LHASEQRELD SELAASWSKL RAYAGRLAIV IHGIRWANGE
IAPERELIVD AETVDAAVRL VEWFGNETRR VYATLRETEG QAEMRDFLDW LVQRGGEITP
RELVQSRRQF KDVSEARTYL SGLEALGYGS WREACSGGRP KRTFVLSPQY QRNTFVDNES
LNAFPISLGD RFIDENELAA IHADFD
|
|---|
| |