| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0506 |
|---|
| Symbol | |
|---|
| ID | 9137171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 625116 |
|---|
| End bp | 626744 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | TROVE domain protein |
|---|
| Protein accession | YP_003628553 |
|---|
| Protein GI | 296120775 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTTT TCGCAAGCAT ACTTGGCCGA CTCCCGAAGG CCAACGCCGT CAACGAAGCC
GGTGGCCTCG CATATCAACT CGAACCTAAA CACGCGCTGG CCCAGGTGGC TGCTACCGGC
ACCTTCAACA ACGCGTTCTA CAGTACTGCA GAATCACAGC TCGACGAAGT GCTCAAGTTG
ATCGACACAG TCGACGACAA CCAGTACCTG GCGAAGCTGG CTCTCTATGC TCGTGAGAAA
GCGTTCATGA AAGACATGCC GGCTGCATTG CTGGTCGCGC TGTCAGTTCG TGATACCGAG
TTGATGCATC GCGTCTTCGA TCGCGTGGTC GACAACGGTC GCGTTCTGCG AACTGTGTTC
CAGATGATTC GCTCAGGTCA GTTCAAGAAC AAGGCCGGTA AGAGTCGCGT TGGCTTGTCG
AGCTCTGTGC AGCGAGCCTT CCAGCGTTGG CTAAACACCG CCTCGGTTGG AAAGCTGTTG
AGCGCGTCTA TCGGTAACGA TCCGAGCTTG CGGGATATCC TGCGTATGGC TCGACCGACA
CCTAAGGACA ACGCTCGCCG GGCGATGTTC GGTTGGTTGA CCGATAAGAG CATCGACAAG
TGGGCACCCG CCACGGAAGC CGACCTGCCG GTCGAAGTTC AGTCGCTGAT CGCGTACCGC
AAGTCGGAAA GCGAAGAAGC GCAGGCCTTG ATCGCTGGTG GACTCGACAT CGTCCGCTGG
GACTTGTTGT CCGATGCCGC CAGGGGACCG AAGGTTTGGG CAGTTCTGGC TCGCAAGATG
GGTCCGCAGG CACTACGTAT GAACTTGAAC ACTTTGCTGC GACACGATGT GCTCGCCACA
AGTGCAATGG TTGATTACGT GGCTGACCGG ATCGCTGACA AGACGGAGAT TCAACGCTCC
AAGCAGTTCC CGTACCAGTA CTTTGCTGCG TACTTGAACG CAGACGACAA CGTTCCGCAG
AAGATCAAGA CTGCACTGCA TAAGGCCGCC GAGATCGCCT GTGGAAACGT ACCGGAGTTG
CCGGGACCGG TGGTGATTGG TCTGGATACA TCTGGATCAA TGAGCAGCCC GGTCACTGGG
AACCGTGGAC GAGGTGCAAC TTCGAAGATG CGCTGCATCG ACGTGGCAGC ACTGTTCGCA
GCAGCGATCC TCAGGCGTAA CCCGGCCAGC GTTGTGATTC CGTTCGATAC GTCGGCTTAC
GATGTGAAGA TCGATCCCAA CGATTCGATC CTGAGCATTG CTCAGCGATT GGCGAAGTAC
GGCGGTGGCG GAACGGATTG TTCGCTGCCA CTGGTTGTTG CCAACCAGAA GTATGCGAGA
CGAAAGTTCG CCGGCATGGT TCTCGTGAGC GATAACGAGA GTTGGGTCGG AACAGGACGG
CACGGTTCAA CCGGTGTGAT GACGGCCTGG GAAGCTTTTT CATCGAACCA GCGAAAGCTG
AGCCGAAAAG CTGCCCCACC GAAGTTGATT AACATCGACT TGCAGCCGTA CCAGACAGTC
CAGGCTTGTG AGCGAACTGA CATCATGAAC ATCGGTGGCT TCAGTGACGC CGTGTTCAAC
GTGATCAGTG CATTCCTCGC TGACAACAAC CAGCGATTCG TGGCTGAAGT GGAAGCGATC
GAACTGTAA
|
|---|
| Protein sequence | MSLFASILGR LPKANAVNEA GGLAYQLEPK HALAQVAATG TFNNAFYSTA ESQLDEVLKL
IDTVDDNQYL AKLALYAREK AFMKDMPAAL LVALSVRDTE LMHRVFDRVV DNGRVLRTVF
QMIRSGQFKN KAGKSRVGLS SSVQRAFQRW LNTASVGKLL SASIGNDPSL RDILRMARPT
PKDNARRAMF GWLTDKSIDK WAPATEADLP VEVQSLIAYR KSESEEAQAL IAGGLDIVRW
DLLSDAARGP KVWAVLARKM GPQALRMNLN TLLRHDVLAT SAMVDYVADR IADKTEIQRS
KQFPYQYFAA YLNADDNVPQ KIKTALHKAA EIACGNVPEL PGPVVIGLDT SGSMSSPVTG
NRGRGATSKM RCIDVAALFA AAILRRNPAS VVIPFDTSAY DVKIDPNDSI LSIAQRLAKY
GGGGTDCSLP LVVANQKYAR RKFAGMVLVS DNESWVGTGR HGSTGVMTAW EAFSSNQRKL
SRKAAPPKLI NIDLQPYQTV QACERTDIMN IGGFSDAVFN VISAFLADNN QRFVAEVEAI
EL
|
|---|
| |