| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_0214 |
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| Symbol | |
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| ID | 9136869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | + |
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| Start bp | 276985 |
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| End bp | 278637 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_003628265 |
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| Protein GI | 296120487 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.855551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCATCGAC TTGATCAAGG CCTGCATGAG TTAATTGTTC GTGGGAAAAA GCAGGGCTTT
CTGACGTATT CACAGATCAA CGACTATCTT CCGGATGAAG CGATGAATCC GGAGAAGCTC
GACGAGTTGC TGGGATCGAT CTGGGAAGAA GGTCTCAAGA TCGTTACCGA TGACCAGGTG
GGGATGATTG TCGAGGAGAA GAAGAAGCCG CGGACTCGTG CCAAGAACGG CAAGGAAGTT
GTCGTCGAAG AAAAGTCGAA GAAGATCGAC GACCCCGTGA GAATGTATCT CACTCAGATG
GGTGAGATTC CCCTGCTGAC TCGTGAGAAG GAAATCTCTC TCGCCAAAAC CATCGAAGTG
ACTCGCAATC AGTTTCGCGA AGAGCTTCTG GAATGCGATT ACGCACTGAA GATGGCATTC
GATACGCTCT CGAAGGTCAA CAGCGGAGAA TTGCCTTTCG ATCGCACCAT TAAAGTCAGT
GTGACCGAAT CCAAAGAGAA GAACCAGATT CTGGGGCGCA TGCCTCACAA CCTGAAGACG
ATTGAAAACC TCCGTAAGCA GGCGATTGGC GACTTCGAGA AATCGATTGA TGCCAATGCC
TCTTCCGATG AGCGTAAAGA AGCTGAAAAG CAGCACCTCA AGCGTCGCCG CAAGATGGTC
AAGCTGATTG AAGAACTCAG CCTGCGAACT CAGCGTCTAC AACCCACCAT GAAGCGGCTG
GAGCAGATCT CCCGCCGGAT GTGCGACCTG CAGCGTCAGA TTGACAGCCT CAAGCACCTG
AAAAGTGCTC GCGACGAACG TGCCAATATC CACAAGGAAT TGCACGATCT GATGATGATG
ACGCTCGAAA CGCCCGAAGG ACTTCGTCAG CGTGTCGAAC GAGTTCGCGA ACGCTTTGCC
AAATACGAAC AGGCAATGCG TGATCTCTCG GGTGGTAACC TGCGACTGGT TGTTTCGATT
GCCAAGAAGT ACCGCAATCG TGGTCTCTCC TTCCTCGATC TCATTCAGGA AGGGAACACC
GGCCTGATGC GTGCCGTCGA TAAGTACGAG TATCGCCGGG GCTACAAATT CAGTACTTAC
GCGACATGGT GGATCCGGCA GGCGATTACC CGTGCGATTG CCGATCAGGC CCGCACGATT
CGTATTCCTG TCCACATGAT CGAAACGATG TCCAAGCTCC GTAAAGTGGC CAAAAAGCTG
CTTCAGGAGA TGGGCCGCGA ACCAACCCTC GAAGAAACCG CTGAAGCCGC TGGTGTTTCT
CTCGAAGAGA CTCGCCGCGT TATGAAGATT TCGCGTCATC CGATTTCGCT GGATCGTCCG
GTGGGCGAAA GCGAAGACAG CTACTTTGGT GATTTCATCG AAGACGACAA CACCGAAAGC
CCTGTGATGG CCGCCACACA GGAGATGCTC AAGGACAAGA TTGATAACGT CCTCAAGACG
CTCACTTACC GTGAGCGGGA AATTATCAAG CTGCGATACG GTCTTGGTGA CGGCTACACC
TACACTCTTG AAGAAGTCGG CCGCATTTTC AAAGTCACTC GTGAACGTGT CCGCCAGATT
GAAGCCAAGG CTGTTCGCAA ATTGCAGCAC CCGGTGCGCA GCAAACAACT AAAGGGTTTC
CTCGATGGCC TGATGATTGC CGTCGCCAAA TAG
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| Protein sequence | MHRLDQGLHE LIVRGKKQGF LTYSQINDYL PDEAMNPEKL DELLGSIWEE GLKIVTDDQV
GMIVEEKKKP RTRAKNGKEV VVEEKSKKID DPVRMYLTQM GEIPLLTREK EISLAKTIEV
TRNQFREELL ECDYALKMAF DTLSKVNSGE LPFDRTIKVS VTESKEKNQI LGRMPHNLKT
IENLRKQAIG DFEKSIDANA SSDERKEAEK QHLKRRRKMV KLIEELSLRT QRLQPTMKRL
EQISRRMCDL QRQIDSLKHL KSARDERANI HKELHDLMMM TLETPEGLRQ RVERVRERFA
KYEQAMRDLS GGNLRLVVSI AKKYRNRGLS FLDLIQEGNT GLMRAVDKYE YRRGYKFSTY
ATWWIRQAIT RAIADQARTI RIPVHMIETM SKLRKVAKKL LQEMGREPTL EETAEAAGVS
LEETRRVMKI SRHPISLDRP VGESEDSYFG DFIEDDNTES PVMAATQEML KDKIDNVLKT
LTYREREIIK LRYGLGDGYT YTLEEVGRIF KVTRERVRQI EAKAVRKLQH PVRSKQLKGF
LDGLMIAVAK
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