Gene Snas_5564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5564 
Symbol 
ID8886778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp5912839 
End bp5913444 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content67% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003514288 
Protein GI291303010 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTTT CGGTAGCGTA TTGTTGGGGG GTGGCGAGCG GAAGGCTGGG GCGCCCCAGG 
GAAGAACGGG TCGACGAGGC ACTGGCGGAA GCCGTGCGGG AACTGTTGAC CGAGACCGGT
TATCAGAACA TCACAGTGGA CCTCATCGCG TCTCGGGCCG GGGTCGGCAA ACCGGCGATC
TATCGCCGCC ACCGCTCCAA GGCCGAGCTG ATCTTCAGCG TCATCGTCCA CGACCTCTCC
GAAACCGCCC CGGACGACGC CGGTTCCCTC CGGGCCGACC TGCGCTCACT GCTCCACCGC
ATCCACGGCG ACCTGTCGGA CCCGGTCGCG GGTTCGGTCA TGTCCAGTCT GCTGTCCGAC
GTGCTCGCCG ATCCCGAGCT GACCGCCCGA TTCCGCGACA CCTTCGTGCG AGCACAGCGC
GACGTGGTGG CCGAACTGTG CCGCCGAGCC GTCGACCGGG GCGAGCTGAA ACGCCTACCC
GAACCGGAGT TCGCGCACTC GCTGCTGCTG GGCCCACTGT TCGTACGCCA CGTCATCCTG
GGCGAGCGGG TACCACGCTC GCAACTGGAC GACTACCTGG ACGCGGCGGT GCGAGCGCTG
ACCTGA
 
Protein sequence
MELSVAYCWG VASGRLGRPR EERVDEALAE AVRELLTETG YQNITVDLIA SRAGVGKPAI 
YRRHRSKAEL IFSVIVHDLS ETAPDDAGSL RADLRSLLHR IHGDLSDPVA GSVMSSLLSD
VLADPELTAR FRDTFVRAQR DVVAELCRRA VDRGELKRLP EPEFAHSLLL GPLFVRHVIL
GERVPRSQLD DYLDAAVRAL T