Gene Snas_3894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3894 
Symbol 
ID8885094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp4162011 
End bp4162748 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content63% 
IMG OID 
ProductPeptidoglycan-binding domain 1 protein 
Protein accessionYP_003512642 
Protein GI291301364 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.795843 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAATC CGGATCCGGA CAAGATCACC GACGAGATGT GGCAATTGTG GACCGAATGC 
GAACAGGTCA TCTCCGGCGT GAGGCTGGGA GGGATCTGGG CGGACAAGCC CGGATATCAC
AACACAGTGG ACGCCAATCA GGCGAACTGG CCCGACAACT ACTCGATCCA GCTGGGGCTC
GATCTGGAAT CCCCGCACAC CAAGGCCCGC GCCATCGACC TGACCATGAG TGACGCCCAG
ATGCGGCTCC ACACCGGTAG GCTGCGCGCG GCGGCACTCG ACGGTGACCC GCGGCTGAGC
GCGGTGCGGG AGTTCTACGG CACCTTGGAC AGCCAGAACG TTTACGGGCT TATCAAGGAT
TCCACGACCG GATCCTGGCG ATCGTCCTCA TCGGATTCAT CGCACCTGTG GCACATCCAC
ATCAGCGTAT TCACCACGTT TGTAAACGAC TGGGATTCAC TGGCGCCGAT CGTCTCGGTG
CTGGCCGACA GCGAAGGAGA CGACGACGTG ATCGGATTGA AGAAGGGCAA TTCCGGCGAA
CGGGTCAAGG GGCTCCAGGC CGCGCTCGGC CGCGCCGGAT ACCCCGTCGA CGTGGACGGC
GAATACGGTC CCAAGACCGC CGCGGCACTG CTGGAAATGC GCAAGGACAT GGGGTCCTCC
GCCGAGAACG GCGACAAGGT GACCGGCTAC GCCTACGCGC AACTGTTGTC CGCCCTGGCC
AAGAAACAAG CCGGCTAG
 
Protein sequence
MANPDPDKIT DEMWQLWTEC EQVISGVRLG GIWADKPGYH NTVDANQANW PDNYSIQLGL 
DLESPHTKAR AIDLTMSDAQ MRLHTGRLRA AALDGDPRLS AVREFYGTLD SQNVYGLIKD
STTGSWRSSS SDSSHLWHIH ISVFTTFVND WDSLAPIVSV LADSEGDDDV IGLKKGNSGE
RVKGLQAALG RAGYPVDVDG EYGPKTAAAL LEMRKDMGSS AENGDKVTGY AYAQLLSALA
KKQAG