| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_2730 |
|---|
| Symbol | |
|---|
| ID | 8829142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013930 |
|---|
| Strand | - |
|---|
| Start bp | 88495 |
|---|
| End bp | 93663 |
|---|
| Gene Length | 5169 bp |
|---|
| Protein Length | 1722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | helicase domain protein |
|---|
| Protein accession | YP_003494683 |
|---|
| Protein GI | 290243013 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.52816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.452434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGATG CCCGGCCCGC AGCCGGTTTG GAGAACGCCA TGCAAGGCAA GATTCAGGAA
AATCTCGATG CCCTCGAACT GCTCGCGGAC CTGCAAGCGG CCCCGCGGGA TCTGACCGAC
GCCGAGCGCG GCACGCTCAA GGCCTACCAC GGCTGGGGTG CGTTGGCGGC GGTGTTCGAC
GACGAGAAGG GCGAGCATGC CGACACCCGG CAAAAACTGC TGGGGCTGGT CACGCCCGAC
GAGTACGCTT CCATGCGTGC TTCGGTGCTG GATGCCTACT TCACCCCCGA ATCGCTGGTC
CGGCTCATGT GGTCCGGTCT CGCCCGCCTG GGCTTTGCCG GCGGGCGTGT CCTCGAGCCC
ACGGTGGGGT CGGGTGCGTT CATCGAGCAC GTACCGGATG CCCTGCGCGA TCACATCACG
GTCACCGGTA TCGAGATTGA TGCGGTCTCC GCGCGCCTGG CGAAGGCGCT GTATCCGGGG
CATTACATCG TGGAGAAGCC GTTCGAGGCC GTGTCCCTTC AGGACGAGGC GTTTGATGCC
GCCATCGGCA ATCCGCCCTA CGACGCGCGC ACGGTGTTCG ACCGCACGGC GAAAAAGCTC
AAGGGTTCCA TCCACACCTT CACCATGGCG AAGGCCATGA AAAAGGTCCG GGCCGGCGGC
GTCGGGGCGT TCGTGGTGTC CCGCTACGCC CTGGATGGCT TCGATGATGC GCGCGATTGG
CTGCTGGACC ACACCCGCCT GCTGGCCGCC TACCGCCTGC CGGTGGAGGT CTTCAAGGAC
GCCGGGGCCG AGGTGATCAC CGATGTGGTG TTCCTCCAGC GCGTGGACGA GGCCAACGGC
ATTCACGCCA ACATGGATGA TTGGCTGCAT CGTGAAGACT TCATGGCCGA TGGCGAGCGC
GTGTCCATCA ACCGGCACTT CGACACCTTC CCGGATCATA TTCTGGGGGC GGCCAGCATC
GAGCGGGATC GCTTCTACAA GCCAGCCCTG AATGTGACCG ATACCGCGCC CGGTTGGGCG
GATGCGCTGG ATGTCGCGAT GGCGCGGGAT CTGGGGCCGG TCGTGACCGA TGCCCTGGTG
CTCGACGCGC ATGATCCGGC CATCGAGCCG GAGTCGAAGT GGTACGCCCA GGTGTTCGGT
TTTGCCCTGG ATCGCAATAC CGGCGAGGCC GTGCAGCGCC TTCCGGATCA TGGCGATACC
GAACGCTGGT GCTGGGCCCC GCGCCTGAAG GGCGCCAAGC TCGATCGCCT GAAAGGCATG
CTCGATCTGC GCGACCGGCT CCGTGACCTG CTGGATGCCG AGGGGCGCGA TGCGCCGGTG
TCGGAACTGA ACGATCAGCG GGCCGGGCTG CGCGATGCCT ACCGGGCCTT CTCCCAGCGC
TACAAGGCGA TCCACGACCG CACCAATGCC GGTGTCATGG GCGAGGATCC GGATTACGCG
CTGCTGCAAG GGCTGGAGCT GGATTACGAC CCCGGCATGA CCCCGGCGGC GGCCGCCAAG
GCGGATGATG AGCCGCGCGA GCCCTCCTGG TCGGAATCGG ATGTACTGCA CCGGCGCACG
GTGTTTCCGG AACCGGCGAA CGCGCGCCCG AAGACCCCCG AGGCGGCCTT GCTGGACTCC
CTGAAGGCGA CCGGCGGGGT GGACATGGAG CGCATGATTC GCCGCAGCGG ACTCGACAGC
AAGACGCTGG TGGACGCGCT CACCGGGCAG ATCTTCCCGA CCCATCCGCT GGTCGGCCTC
TGGGTTTCGC GCAAGCAATA CCTTTCCGGG AACGTGCGCG AAAAGCTGGA GACCGCGCGC
CAGTATGCCG AGCAGCATCC GCAATTCCAG GCGAACGTGG ATGCGCTGGA GTCCGTGCTG
CCGGAACCGG TGGCCGCGGC CGATATCGTG GTGCCGGTGG GCGCGGCCTG GCTGCCGGGC
GATGTGCTGG CGGATTTCGC GCGCTCCCTG GTGGAGGTCG AGTACCGCAG CCTGCCCGAA
TACGTGGCCG GTCTGTGGCA TTTCGCGGAT CCCTCCCGGA TCAACCGGGC GAAGAACCAG
AAGGAGTGGG GCGCGTCGGA CGACTGGCCC TTTACCCGCA TCTTCGAGCG CATCTGCAAC
AACCGTTCCC TGACCGTGTA CACCACACTG ATCGACGGGT CGCGGGTGCA GGACATGGAT
GCGACCCGCC AGGTCGAGGA ACGGGCGCGC GCGATCCGGG AGGCCTGGGA GGACTGGTTG
ATGGCGGATG CCGACCGCCG GGAACGCCTG GAAGGGATCT ACAACGAGCG CTTCAACTGC
TACGTTACCC CGCAGTATGA CGGCGGTTTT CTGCTGAACG AGGACGGCAC GCTGCCGGGG
TCCTCCGGGG CGTTCGTTTA CGACCGCCAC CAGATCGACG CGGCCTGGCG AATCGCGCAG
GACGGCACCG CCCTGATCGA TCATGTGGTG GGGGCGGGCA AGACCCTGAC CGCCATTACC
GGGGCCATGC TGGCGAAGCG CATGGGGCGC GTGAACAAGC CGTGTTTCGT GGTGCCATCG
CACCTGGTTG GGCAGTGGGC CGACGAGTTC CGCAAGGCGT TCCCGGATGC CCGCGTGCTC
GCGGCCTCCG AGGATGAGTT CGCCGGGTCC AAGCGCTCCC GGCTGTTTGC CCGGATCGCA
ATGAACGAAT GGGATGCCGT GATTGTTCCG CACTCGTCGT TCCAGTTTAT CGACATGCCC
CCGCATACCA AATCGACGAT CCTGGACGAG ATTCAGGAAA GCCTCGAGGA CGGCATCCGG
AAGGCGAAAG AATCCAACGA CTGCCGGCAG ACCGTGCGTT CGATGGAGCG CGCGAAAAAG
CGCATCGAGA ACAAGATCGA AAAGCTGGTC GAGCGTCGCC CGAAGGATCG CACGGTGACC
CTGGATGACA TGGGCATCGA TTCGGTCCTG GTGGATGAGT ACCACAAGGC CTTCAAGAAC
CTGTTCTACA TGACCGAGCA TCATGGCGTG GGCGGCCTCG GAAAGCCGGA TGGCTCCATG
GCGGCGTTCG ATCTGCTGCT GAAGGCGCGC TGGATTCAGG AAAAGCCGGG CCCGGGCGGT
CTCGTACTGC TGACCGGGAC CCCGATCTCG AACTCTGTGG CCGAGATGTG CACGGTCCTG
CGCTTCCTGG CGCTGGATGT GTTGCAGGAA ATGGGCATCG AGCATTTCGA CGCCTGGGCC
TCGCTGTTCG CCACCCCGAC CGCTTCCTAC GAGCTGACGT CCACCGGTGG TTATCAGCTC
AAGACCCGGT TCCGTGCGTT CAACAATCTG CCGGAGTTGA TGCGGCTGTA TTCCCAGTTT
GCGGATGTGG TGCACAAGCC GGACCTTCAG GCGATCTATG CCGAAAAGGG GCTGGAATGG
CCGACCCCGC CGCAGCGCGA GGGTGGTCCG ATCATGGTGC ACGCCGAGCG CAGCCCGACC
CAGGCGGCGT TGATGGCGGA GATTGTGAAG CGTGCGGATA CCATGTCCTC CGTCGATCCG
AAAGTGGATA ACGCGCTGAA GATCTTCAGC GATGCGGGCA AGATCGCGCT GGATGCCCGG
ATGTTCACCC CCGACGCGCC CGACTTTGCC GGGTCGAAGG TCAACGAGTG CTGCCGCAAC
GTCTGCCGGG AATACCTGCG CTGGAACGCG TACCGGGGCA CCCAGTTGAT CTTTGCCGAC
TCGGGGACCC CGAAGGGTTC GGGGGATGAA GGCCACGACC TTTACAACGA CCTCAAGGCC
AAGCTGATTG ACCTCGGGAT GCCCGCGCGG GAGATCGCCT TCATCCATGA TGCGCCGACG
CCGCGCAAAA AGAAGGAGCT GTTTCGCAAG GTTCGCCGCG GCGATGTCCG TGTGCTGATC
GGGTCCACGT TCCGCATGGG CGAGGGCATG AACGTACAAG AACGCCTGGT CGCCAAGCAT
GACCTGGATG CGCCGTTCCG GCCCTCCGAC GTGGAGCAGC GTGACGGCCG CATTGATCGG
CGCGGGAACC ACCTGCTGGA GACCGTACCC GGCTTCGAGG TGGCGCTGTA CCGCTATGGC
ACGATGCTGA CTCTGGACGC GATGCGTTGG GCGATCCTCG AGCAGAAGGC GCACTTCATC
AACCAGATCC GCAAGGGTAC GGTCAACGAC CGCACGGTGA CGGATGCCGA TTCCGATGCG
GTGGAGAGCG GTTTTGCGGC GATGAAGGCC GAGTTGTCGG GTAACCCCCG CGTCCTGGAG
CATTTCGAGC TTCAGGAGGA ATACAAGCGC ATGGAAAGCC TGCTGCGCGG CGACCGCCGG
GCGCGGTTCG AGGCCGAGGG CGTACTGTCG CGCAAGGATG CCCGCGAACG GGATATCCAG
CGCTGGGCGG CCGACTGCGA TGCGGACCTG GCGGATCTTT CCGGGTATGC GGAGCTGACG
CTGTCGGTTC GGGGGGAATC CCAGTCCGTG CAGGATCGTG AGGCCTTCGC GGATCTGTTG
ACGCGGGCGA TCAACCAGGC GATGAAGGCC CCCAAGCATG CGCTCCGCAA GGGGGCGGCT
GTCGGGGCGC TCAATGGACT GGAACTCAAG CTGACGATGG GGAGCGGCGT TCGCACCCGT
CTGGATCTCG TCGGGCGTTT TCTCGGGGCG GAGACCACCT ACGGCCAAGG CGAGAAAATC
AACATCAATG GCCTGAGCCG TCGTCTGTCC GGGATGGTCG AAAAACTCCA GGACGAGGGC
CGCGGGCGGA TCGACCGGAT GTGGTCGCAG TTCCATCAGG ACATCGAGGG CGCGCAGCAG
GTATTGGACC GGGAGCCGCC GGTCACCCGC GAGGCGCTTT CGGATCTGGG GGCTCGGATT
CTGGAGATCG AACAAGAGCT GGCCGAGAAG AAGACCGAGG ACGAGACGTC CGAAGACGCA
GCGGAGGTCG AGGCCCCGCC GGAGCCGACC TTTTCCGAAT GGCTGGCCGA GCACGGGCCG
ATCATTACCC CGGCGGCCCT GGCCGAAAGC GGGGGCGCCG GGTCGGTACC GGAGACCCCC
GAGGTCGAGG CGGAGGATAT GCCCCCGGTC GAGGATGAAC CGGCCATGGC GTTTGCGCTG
GCGGAGGATG ACGCCCCGCT GCCGGAGGCG GCCGACGCTG AAGGGGCGGT GGACCCGGTG
ACCGGCTTTG CCCGCCCGAT GACCGGGGAA ACCTTGGATC TGTTTTCGGA TCTGGAACAC
GCTGCGTAA
|
|---|
| Protein sequence | MADARPAAGL ENAMQGKIQE NLDALELLAD LQAAPRDLTD AERGTLKAYH GWGALAAVFD
DEKGEHADTR QKLLGLVTPD EYASMRASVL DAYFTPESLV RLMWSGLARL GFAGGRVLEP
TVGSGAFIEH VPDALRDHIT VTGIEIDAVS ARLAKALYPG HYIVEKPFEA VSLQDEAFDA
AIGNPPYDAR TVFDRTAKKL KGSIHTFTMA KAMKKVRAGG VGAFVVSRYA LDGFDDARDW
LLDHTRLLAA YRLPVEVFKD AGAEVITDVV FLQRVDEANG IHANMDDWLH REDFMADGER
VSINRHFDTF PDHILGAASI ERDRFYKPAL NVTDTAPGWA DALDVAMARD LGPVVTDALV
LDAHDPAIEP ESKWYAQVFG FALDRNTGEA VQRLPDHGDT ERWCWAPRLK GAKLDRLKGM
LDLRDRLRDL LDAEGRDAPV SELNDQRAGL RDAYRAFSQR YKAIHDRTNA GVMGEDPDYA
LLQGLELDYD PGMTPAAAAK ADDEPREPSW SESDVLHRRT VFPEPANARP KTPEAALLDS
LKATGGVDME RMIRRSGLDS KTLVDALTGQ IFPTHPLVGL WVSRKQYLSG NVREKLETAR
QYAEQHPQFQ ANVDALESVL PEPVAAADIV VPVGAAWLPG DVLADFARSL VEVEYRSLPE
YVAGLWHFAD PSRINRAKNQ KEWGASDDWP FTRIFERICN NRSLTVYTTL IDGSRVQDMD
ATRQVEERAR AIREAWEDWL MADADRRERL EGIYNERFNC YVTPQYDGGF LLNEDGTLPG
SSGAFVYDRH QIDAAWRIAQ DGTALIDHVV GAGKTLTAIT GAMLAKRMGR VNKPCFVVPS
HLVGQWADEF RKAFPDARVL AASEDEFAGS KRSRLFARIA MNEWDAVIVP HSSFQFIDMP
PHTKSTILDE IQESLEDGIR KAKESNDCRQ TVRSMERAKK RIENKIEKLV ERRPKDRTVT
LDDMGIDSVL VDEYHKAFKN LFYMTEHHGV GGLGKPDGSM AAFDLLLKAR WIQEKPGPGG
LVLLTGTPIS NSVAEMCTVL RFLALDVLQE MGIEHFDAWA SLFATPTASY ELTSTGGYQL
KTRFRAFNNL PELMRLYSQF ADVVHKPDLQ AIYAEKGLEW PTPPQREGGP IMVHAERSPT
QAALMAEIVK RADTMSSVDP KVDNALKIFS DAGKIALDAR MFTPDAPDFA GSKVNECCRN
VCREYLRWNA YRGTQLIFAD SGTPKGSGDE GHDLYNDLKA KLIDLGMPAR EIAFIHDAPT
PRKKKELFRK VRRGDVRVLI GSTFRMGEGM NVQERLVAKH DLDAPFRPSD VEQRDGRIDR
RGNHLLETVP GFEVALYRYG TMLTLDAMRW AILEQKAHFI NQIRKGTVND RTVTDADSDA
VESGFAAMKA ELSGNPRVLE HFELQEEYKR MESLLRGDRR ARFEAEGVLS RKDARERDIQ
RWAADCDADL ADLSGYAELT LSVRGESQSV QDREAFADLL TRAINQAMKA PKHALRKGAA
VGALNGLELK LTMGSGVRTR LDLVGRFLGA ETTYGQGEKI NINGLSRRLS GMVEKLQDEG
RGRIDRMWSQ FHQDIEGAQQ VLDREPPVTR EALSDLGARI LEIEQELAEK KTEDETSEDA
AEVEAPPEPT FSEWLAEHGP IITPAALAES GGAGSVPETP EVEAEDMPPV EDEPAMAFAL
AEDDAPLPEA ADAEGAVDPV TGFARPMTGE TLDLFSDLEH AA
|
|---|
| |