| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6838 |
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| Symbol | |
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| ID | 8716106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013732 |
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| Strand | - |
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| Start bp | 7245 |
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| End bp | 9146 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | |
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| Product | Type IV secretory pathway VirD4 protein-like protein |
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| Protein accession | YP_003391586 |
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| Protein GI | 284005767 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00343153 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.0724614 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAGA ACCGTAACGC CGTACTATTG TTGGTCGCCC TCGTCGCCCT GCTGGTAGGG
GGCGAATATT TTCTACTACT ACACGTCGCG CCGAGTGATG CCGCCTGGTA CACCAAACTA
CTGAACCTTT ACATGAAAAG GGGCTGGCTC TTTCGGGTGC TGTTTGCCCT GATGATCCCG
ATGGCCTTCG CCTTACCTGA CGACACCAAG AGTTATAGGG AGCTACGAAA GGATAAACGC
CCGGCGATGA AGGTGCAGCT CGTCGCGCTG GTAGGCTACC TCGTCGGTGT AGCCCTGTTG
GGTATGGCAC ACCGATTTCC GTACCAATTC AGGTACATTG TACCAGTAGG AGCGGGGGTA
AGTACTCTGT TCGGCATCGG TGTCGGGTTT TGGCTGCTGC GCCCGCAGCC CAAGCGCCCG
ATTACTGAAG ACCGGAAGGC GGGTGTATCA AAAAAAGGGT TCCAGTTTCG CACGATGTCG
GGCGGCTGGA TCAAAATACC TAACCCATTT CGGGGAGTGT TCATTACGGG TGGCCCCGGC
TCCGGTAAAT CGGAGTCGTT GGCCAAGCCG TTTATCCGGC AGGCATTCGC GCAGAACTAT
TGCGGTATCC TCTATGACGT AAAATTTCCC GAACTGACAA AGTACGCCTA CCACTACCGC
AAGCTGAATC CTGATGCAAC GACGCAATTC TGTATCCTCA ACTTTCAGGA TATGAATCGG
ACGCACCGGC TCAATCCGAT TGCACCCGAA AATTTACTGA GCATCACCTA CGCGGAGGAA
TATGCTCTGG CACTAATCAA AAATCTACAA CAGGAAACGA TAGAAAAACA GGACTTTTGG
TCGCGTTCCT GCACGGCCGT CCTGACGGGC CTGATCTGGT ATTTACGCAA GCATCATCCG
GCTCAATGCA CGTTACCCCA CGCCGTAACG CTGATTACGA AGATGCCTTA TGACAAGCTA
ATGACGATGA TCGGTAGCGA CTCCGAATGC CTGAGCTACG TTATGAGTGT TATTACGGCT
ATCGGTAACA AGTCCGCCGA TCAGCTATCG GGGGTAATCG GTACGTTGCA GGTGATGCTG
GCAAAGCTGG CCACGCCCGA AGTATTTTGG GTAATGTCGG CCACCGACGA GGGGTTCAGT
ATGGACCTCA ACAACCCCAA TAAGCCAATT TTCCTGTGCT TGGGTGGCGA CCGCGAAGTA
ATGGATTCAC TACGGCCACT CCTGGGACTA TACAGTACGG TTGCGCTGAA ACGCATGAAC
CGGCAGGGCA AGCACCATTC CATTCTGTTG CTGGATGAGG CTCCTACCAT TTACATTCCC
AATTTCGAGC AGATACCCGC TACGGGCCGG AGTTCGCAGA TTGCGACGGT GTATATGTGT
CAGGACTTGT CGCAGGTTCG CAAGTATTAT GGCGAAAAGG AAAGCCAGAT GATTTTGGGA
ACCCTCAGCA ACCAGTTCTA TGGAGCCGTT TCAAGTGCGG AAACAGCCAG CTATGTCAGT
CGGTTGATCG GCAAACATGA AGTCATTACG CCGGAAGAAT CCCGCGACAA CAGCCCGGCG
TTTGACCTCG GCAGCCTGTT CGATAGACGA CACCAGCCGC AGCGGGGCCG CAGCACTATC
AGTTACCGCA AACAGGAACG CCCGATTGTC AACCCCGAAG ACCTGCATGA ATTTGACAAA
GGCGAATTTA TTGGCTTCAC CGTCGAGTCC AAGCAAGGCC GTTTTTGGGG TCGGATTGCA
CTTGAACCGG ATGAGCAGCC CGTGAAAAAT CTGCCCAAGT TCTCGTCGCA GCACGACTTA
CAGGTAAACA TGGATAGCAT CGTACTGGAT TGCGCGACGA TTTTGGGTCT TGACGATGTT
GCAGTCTCCA ACCTGCTTTC TGTTGAAAAA AGCATTGTAT AA
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| Protein sequence | MNQNRNAVLL LVALVALLVG GEYFLLLHVA PSDAAWYTKL LNLYMKRGWL FRVLFALMIP
MAFALPDDTK SYRELRKDKR PAMKVQLVAL VGYLVGVALL GMAHRFPYQF RYIVPVGAGV
STLFGIGVGF WLLRPQPKRP ITEDRKAGVS KKGFQFRTMS GGWIKIPNPF RGVFITGGPG
SGKSESLAKP FIRQAFAQNY CGILYDVKFP ELTKYAYHYR KLNPDATTQF CILNFQDMNR
THRLNPIAPE NLLSITYAEE YALALIKNLQ QETIEKQDFW SRSCTAVLTG LIWYLRKHHP
AQCTLPHAVT LITKMPYDKL MTMIGSDSEC LSYVMSVITA IGNKSADQLS GVIGTLQVML
AKLATPEVFW VMSATDEGFS MDLNNPNKPI FLCLGGDREV MDSLRPLLGL YSTVALKRMN
RQGKHHSILL LDEAPTIYIP NFEQIPATGR SSQIATVYMC QDLSQVRKYY GEKESQMILG
TLSNQFYGAV SSAETASYVS RLIGKHEVIT PEESRDNSPA FDLGSLFDRR HQPQRGRSTI
SYRKQERPIV NPEDLHEFDK GEFIGFTVES KQGRFWGRIA LEPDEQPVKN LPKFSSQHDL
QVNMDSIVLD CATILGLDDV AVSNLLSVEK SIV
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