Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_6560 |
Symbol | |
ID | 8730346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 7959437 |
End bp | 7960936 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | putative L-arabinose isomerase |
Protein accession | YP_003391316 |
Protein GI | 284041386 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGTCTA CACCCCTCAC GCAGTCAGCG GTCTATTCTG ACACAAAGGC ACCGGCCACT TCGTACGCGC TTAAAGTCGG TTTATTTGGT ATTGGCCTCG ATGCCTACTG GCAGCAATTC GATGGTCTGG AGGCCCGACT GCAGGGCTAC CTGAGTCAGT TGGCAACGGC CATGCAGCGG CCGGACGTCG ACATCGTTAA CCTCGGCCTG ATCGACACAC CCGAAAAAGC CATGCTGGCC GGGCACCAGT TCCGACAGGC TGACGTAGAT ATTATTTTCC TCTACGTAAC TACCTACGCG CTATCGTCTA CCGTGTTGCC GGTGGTACGC CGGGCCAAAG TACCAGTCAT TGTGCTTAAT CTGGCACCCG AACCAGCTAT CGACTACACC TGGTTCAATG CGCTGGACGA CCGCACCCGC ATGACCGGCG AATGGCTGGC CTACTGCTCG GCCTGTCCGA TACCCGAAAT TGCGTCGGTC TTTAAGCGGT CGAATATCCC CTTCTATCAG GTAACAGGCA TGCTCCAGAA CGACCCGCTG GCCTGGACCG AGATTGACGA GTGGATCGAA GCGGCCCGCG TGGCCAATAT CATGGCGCAC AACCGCCTGG GCCTAATGGG CAACTATTAC GGAGGTATGC TGGATATTTA CGCTAACCTC ACGCTGCACA GCGCAACCTT CGGCGGGCAT ATCGAAATGG TTGAAGTCGA CCAGTTGTCG GCCCTTCGGC AGATGGTATC CGATGAGGAC ATTCAACAAC GAGTGGCTCT TTTCACCGAA ACCTTCGAGG TACAACCCGA CTGCCCACCG GCCGAACTGG AACGGGCTGC CCGCACGTCG GTCGCTCTGG ACCGGTTGGT GGCCGAGCTT GACTTAGGCT CGCTGGCGTA TTACTATAAA GGCACAGGCA ATCGGAACGC CGGTCCGACC CTCAACGAAG ATACTATGAG TTCGGTTATT CTGGGCTGTT CATTACTAAC AGCCCGGGGC ATTCCCGTTG CCGGTGAGTA TGAGGTTAAA AACGCGCAGG CGATGAAGAT CATGGACGCT TTTGGCGTAG GCGGTTCCTT CACAGAATAT TACGCCATGG ACTTCACGGA TGATGTGGTA TTGATGGGCC ACGACGGACC GGGACATATC GCCATTGCCG AGGGCAAAAC GAAGGTTCGC CCGCTTCAGG TTTATCACGG TAAAGTAGGA AACGGCCTGT CGGTAGAAAT GTCGGTGAAA CAGGGGCCGG TAACCCTGCT CTCGGTCGTC GAAACCATGG ACGGCAAGCT ACAGCTGTTG CTGGCAGAAG GCGAATCGGT AGTGGGGCCA ATCCTCGAAA TCGGCAATAC CAACAGCCGC TATCGGTTCC CGATCGGTGC CCGTCAGTTT GTCAACGACT GGAATAGCCA CGGGCCAGCC CACCACTGCG CTGTGGGCGT GGGGCACATT TCGGGTAAGT TGACAAAGCT GGGCAAGTTG CTGGACGTTG AGGTCATCCA GGTATGTTGA
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Protein sequence | MQSTPLTQSA VYSDTKAPAT SYALKVGLFG IGLDAYWQQF DGLEARLQGY LSQLATAMQR PDVDIVNLGL IDTPEKAMLA GHQFRQADVD IIFLYVTTYA LSSTVLPVVR RAKVPVIVLN LAPEPAIDYT WFNALDDRTR MTGEWLAYCS ACPIPEIASV FKRSNIPFYQ VTGMLQNDPL AWTEIDEWIE AARVANIMAH NRLGLMGNYY GGMLDIYANL TLHSATFGGH IEMVEVDQLS ALRQMVSDED IQQRVALFTE TFEVQPDCPP AELERAARTS VALDRLVAEL DLGSLAYYYK GTGNRNAGPT LNEDTMSSVI LGCSLLTARG IPVAGEYEVK NAQAMKIMDA FGVGGSFTEY YAMDFTDDVV LMGHDGPGHI AIAEGKTKVR PLQVYHGKVG NGLSVEMSVK QGPVTLLSVV ETMDGKLQLL LAEGESVVGP ILEIGNTNSR YRFPIGARQF VNDWNSHGPA HHCAVGVGHI SGKLTKLGKL LDVEVIQVC
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