Gene Slin_6533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_6533 
Symbol 
ID8730319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp7930275 
End bp7932185 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content51% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003391289 
Protein GI284041359 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.920736 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCGA ATGAGTCACC TGAATTACTC GAGGCTGTAT TAGCCAATTC GCTTACAAAC 
ATATATGCGG CTAACGCAAT ACGACACCCC GAGTCCGGAC AAATCATCGA CTTCCAGATT
GTACTGGCAA ATCCCACCTT TAGAGAACGA AGCGGCTATA CCGGCAAGCA GTTACGCAGC
CAGAGCTTAT TAACGCTCTA TCCGGACTTA GCCCAATCAA CCCTATTAGG CCGGTTTATA
GAGGTAGTCG AAACGCGTCG GGTTTTTCGG GGAGAGGAAT ATTTCCCAAA CTCCACCAGC
TCGTTCTGGT ACGATTTATC CCTAAGTCCA TTTGGGGATG GTCTGGTGGT AAATTTTACA
GACACGACTG CCAGATACCA GGAACAGCAA CTGGTCCAAC AGCAGGCCCA ACAACTTCAG
GCTACCCTGG ATGGGTCTAT AAGTAGTATT CTGGCGATGA CCGCTATTCG TAATCCACAA
GGACAGATCA TTGATTTTCG GATAGATAAA GCCAATCAGG CTGTCGAGCG TAGCTTGGGG
AAGACACCCG CCGAACTGGA AGGCCATACG CTGTTGAGCG TGTATCCAGG TAATGTAGAA
AGTGGCTTTT TCGCGCTTTA TGCCAAAGCC GCTGATACAG GGGAGTCACA ACAGGCAACG
CTGCATTATA CGGACGTCAA TGGCTTCCAG GGCTGGTTTG AGGCTTCGGC TGTACGGTAC
GCGCCTGATA AAATTGTGCT CACGTTCATG AACGTGACCG ATTATAAGCA AACCGAAGCA
GTGATGCGAC AGCAGGCTGA TCTCTTACAA AGTGTGCTGG ATGCGACCAT GAATACGGTT
GCTACCTATC AGGCTGTTCG CGATTCAATG AACCAAATTG TAGATTTTCG CTTCACAATG
GCCAACCAGG CCGCCCTGGA GGTGGTTAAC CTAACAGCCG AAGAGTTGTA TACCAGAACC
CTGCTGGAAG TGAGTCCTGA CCTGGCCAAT AGTGAGTTGT TCAATCAGTA CGTTACGGTG
GTCCAAACCG GCCTACCGAT AACCTTTGAA CGTTACCGGC AGGGACGCTG GTTCTTGGCT
AACGCCGTCC GCTTTGGCCA GGACGGGCTA CTGACATCCT CCCTTGATAT TACGTTGTTG
AAGCAGGCCC AGCTTCAGGT TGAGCAACTC AACCAACAGC TTCAACAACG TAACGCCAGC
CTTGACCAGT TTGCCGCCGT AGCCAGCCAC GACCTGCAGG AGCCGCTCCG TAAGATCAAG
TCATTTGGCG ATATTCTCCT GGACCAGTAC GCGCCAAACC TGGGTGATGG CGTAGGCTTA
CTGAGCCGGA TGCAATCGGC CGCTGACCGA ATGCAAACAC TCATCCGGTC TTTACTGGCG
TATTCGCGTT TATCGCAGGA ACAGCCTGCT ACGTTTCAGC CTGTCGATCT AAATCGTGTA
GTTACCGAAG TGATAAACGA CCTGGAAGTG GCCATTCAAG AGAAAGGGGC CGTTCTGGAA
CTGAGCGACT TGCCGACGCT ACCCGGAGAT GCACTTCAGC TGCGACAGGT ATTTCAAAAT
CTACTGAGCA ATGCGCTGAA GTTCACCAAA CCGGGCCGCT TACCCAGGGT CATACTAAGA
GCCCAGCCAC TGAGGGACAA CGAACTTGCG GAGGAGGCTA GTCTGGCTCC TGGCTCTTAC
TGGCAGATTA CGGTAGCTGA TAATGGCATT GGTTTTGGAG ATGAGTATCG TCAACAAATC
TTCGGTGCTT TTGAACGGCT ACACAGTAAA AGTAGTGTGT ATGGAGGCAC GGGGATCGGC
CTGGCCATTG TACGCAAGGT AATGGAAAAT CACCAGGGGG GCGTGACAGC CCACTCAAGC
GAGGATGAAG GGGCTACCTT TACGCTCTTT TTACCAACTG AGGCCAGTTA G
 
Protein sequence
MDANESPELL EAVLANSLTN IYAANAIRHP ESGQIIDFQI VLANPTFRER SGYTGKQLRS 
QSLLTLYPDL AQSTLLGRFI EVVETRRVFR GEEYFPNSTS SFWYDLSLSP FGDGLVVNFT
DTTARYQEQQ LVQQQAQQLQ ATLDGSISSI LAMTAIRNPQ GQIIDFRIDK ANQAVERSLG
KTPAELEGHT LLSVYPGNVE SGFFALYAKA ADTGESQQAT LHYTDVNGFQ GWFEASAVRY
APDKIVLTFM NVTDYKQTEA VMRQQADLLQ SVLDATMNTV ATYQAVRDSM NQIVDFRFTM
ANQAALEVVN LTAEELYTRT LLEVSPDLAN SELFNQYVTV VQTGLPITFE RYRQGRWFLA
NAVRFGQDGL LTSSLDITLL KQAQLQVEQL NQQLQQRNAS LDQFAAVASH DLQEPLRKIK
SFGDILLDQY APNLGDGVGL LSRMQSAADR MQTLIRSLLA YSRLSQEQPA TFQPVDLNRV
VTEVINDLEV AIQEKGAVLE LSDLPTLPGD ALQLRQVFQN LLSNALKFTK PGRLPRVILR
AQPLRDNELA EEASLAPGSY WQITVADNGI GFGDEYRQQI FGAFERLHSK SSVYGGTGIG
LAIVRKVMEN HQGGVTAHSS EDEGATFTLF LPTEAS