| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6532 |
|---|
| Symbol | |
|---|
| ID | 8730318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 7928423 |
|---|
| End bp | 7930177 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | Mannan endo-1,4-beta-mannosidase |
|---|
| Protein accession | YP_003391288 |
|---|
| Protein GI | 284041358 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCTG CTTTACTCAA TTCGTTTAAC CGGGCGATAC CTCGCCCAAA GGGAGCAATC
CCTTTTTTTT TGTCCTTATG GCTAATTTTC GGGCTTTTTG TCAACGCATG GGCGGCTCCC
GGTCCCATTA AAGTTGAGGC TGAATTGGGT GAGCTGACAG GTGTTGAGGT TGCCTCAACG
AATAAGGGCT TTTCCGGAAC TGGTTATGTG ACGGGGCTCG ACGATCCAAC CGATAAGCTT
GTTCTGACGG TCAACGCCCC CGCCGGATTG TACGAACTGG CCATTGGCTA TGCTTCTCCC
TTCGGCGATA AAGGGATTGA CTTTCAGGTC AACGAGGAGC GGGGGAGTGG GATGCTGAAA
CAAACGTCTG CCGGGTTTAC CACCGCCGGG CTGGGCAAGT TCCTGCTGAC CGAGGGCAAG
AATACCATTA CTATATACCG GGGCTGGGGC TATTTTGATA TCGATTACCT GTTGTTTACG
CCCGCCACGG TAGTCTTGCC GACCAAACCA CAAAAAACGC TTGTCGATGC TCAGGCTACG
TTATCCACAA AGGGCCTGTT CTCGTATCTG GTCGATCAGT ACGGCAGTAA AGTGATTTCC
GGTCAGCAGG ACGATGTGGA GTACATTCTG GAAAAAACGG GTAAAGAACC GGCCATCGGC
TCGTTCGATC TGATCGACTA TTCGCCCAGC CGGGTTCAGT TTGGAGCAAC GCCCCAGCGG
AGTAGCGAAG ACATCATCAA ATGGGCCAAG AAAGGCGATG GGCGGGGCAT CATCAGCCTG
ATGTGGCACT GGAACGCGCC CACCGATCTC ATCAACCAGT CCCCCGATAA ACTCTGGTGG
CGCGGTTTTT ATACCGATGC TACCACCTTC GACATTGCCG CCGTGCTGGC CGATAAACAG
GGCGAACGCT ACCAGCTCAT CCTGCGCGAT ATTGACGCCA TTGCCTTACA GCTAAAGAAA
TTTCAGGCCG CCGATGTGCC GGTCCTGTGG CGACCGTTGC ATGAAGCCTC CGGCGGCTGG
TTCTGGTGGG GTGCCAAAGG AGCCGGGCCG CTGAAGGAAC TCTGGCGTGT TCTGTACGAC
CGGCTTATCA ACTACCACCA ACTTCATAAC CTGATCTGGG TATATACTGC CACCGATACG
TTCAAATCCG ACTGGTATCC GGGCGATCAA TACGTAGATA TTGTCGGAAT GGATATTTAT
ACCGACCCAA CCGCCAACAT GAGCGGCAAC TGGAGCAGTG CGCAATCGCA ACTGAACGGA
AAGAAACTGG TGACATTATC GGAAACGGGT AACCTACCGA GCCCGGATAA AATTCGCGGG
TTTGGTACGT GGTGGTCGTG GTTTGCCGTG TGGACCGGAA CCGACTACAT CAAAAAACAA
CCTATCGACC AGCTTAAGGC TGTCTTCACC GACAGAGACG TGATTACGCG GGATGAACTA
CCCGACTGGC GTCCACCGCT TACGCTGGCG GTTGAAGAGC CGGGCGCTGG TAAAGGCAAC
ACGCCTTTAG TAGTTACTTT ACTGGGAAAC CCCACCACAA GTGACAAGGC CGATATAAGC
GTGAGGAGCG CCGGAGGAGG GCACATAAAA ATTGTGGTGA CAGATGCTAA AGGAAACCAG
TTGCTCACGA AAGAGATTGA GCGGGCCGCC GATGTTGAAA CGTACTCACT GCCGCTGGGC
AAAGCTGATG GCATTTACTT CATCCGAGTC AGTAGCCAGA CCGAGAGCCA GACGCTGAAA
GTAGTAAAGC CTTGA
|
|---|
| Protein sequence | MISALLNSFN RAIPRPKGAI PFFLSLWLIF GLFVNAWAAP GPIKVEAELG ELTGVEVAST
NKGFSGTGYV TGLDDPTDKL VLTVNAPAGL YELAIGYASP FGDKGIDFQV NEERGSGMLK
QTSAGFTTAG LGKFLLTEGK NTITIYRGWG YFDIDYLLFT PATVVLPTKP QKTLVDAQAT
LSTKGLFSYL VDQYGSKVIS GQQDDVEYIL EKTGKEPAIG SFDLIDYSPS RVQFGATPQR
SSEDIIKWAK KGDGRGIISL MWHWNAPTDL INQSPDKLWW RGFYTDATTF DIAAVLADKQ
GERYQLILRD IDAIALQLKK FQAADVPVLW RPLHEASGGW FWWGAKGAGP LKELWRVLYD
RLINYHQLHN LIWVYTATDT FKSDWYPGDQ YVDIVGMDIY TDPTANMSGN WSSAQSQLNG
KKLVTLSETG NLPSPDKIRG FGTWWSWFAV WTGTDYIKKQ PIDQLKAVFT DRDVITRDEL
PDWRPPLTLA VEEPGAGKGN TPLVVTLLGN PTTSDKADIS VRSAGGGHIK IVVTDAKGNQ
LLTKEIERAA DVETYSLPLG KADGIYFIRV SSQTESQTLK VVKP
|
|---|
| |