| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6338 |
|---|
| Symbol | |
|---|
| ID | 8730122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 7687074 |
|---|
| End bp | 7689947 |
|---|
| Gene Length | 2874 bp |
|---|
| Protein Length | 957 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | membrane-bound dehydrogenase domain protein |
|---|
| Protein accession | YP_003391096 |
|---|
| Protein GI | 284041166 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGGT CCTATTTATT CATCCCTTTT GTCGGCGCGG CTCTTGCTCT GACCAGCCTA
CAAAGCCCCG CCCAATCGAC TAAAGCCAAA CCGGCTGTGC AGGCCACCGA AAAGGTTGAC
CGGGAGTATG CGATGGAGGC TACTATGCTC GGGTACTTCT CGAAAGATGG TGCCCGAAAT
CCTACGCTGA AAGCCAATAA AGGTGACCGC GTTCGGATTA CGATTACCAA TGGCGAGCAG
ATGACGCACG ACATTTCGCT GGAGAAGCTA GGCCTAAAAA GTAAGTCGAT CAACGACAAG
GGAGCCAGCA CCAGCATCAC GTTTACCGCC GATAAGAGCG ATGTCTATTA CTGCTCGGTA
CCGGGCCACC GGGCGGCTGG CATGGTCGGT AATTTCGAGG TGGTGGAAGG CGCGCTGACA
ACCGCGACCG TTGCTGGACA GGTGCCGATG AAGAACGGCA AACCCCTCAA CCTGAATTTC
GAAACAGGCA CCCTGGCCGA CTGGACCGCT ACCGGCGATG CGTTCACGAA TCCGCTCGTC
GATCAGGACC CCTCACCGGT ACATGACAAA GAGATGCACA TCGGTTTTGA TGGGAAGTAT
TTTCTGACCA GCGGGGGCAC TGTCAACTAT AAGCAAACCG GCACGTTAAC GTCTGTGCCT
TTCACTGTTA CTCAGCCGTT TGCGGCTTTC AAAGTGTCGG GAGGGGCGTT GCAGGATACG
CGGGTCGAAC TCGTGCAGGC TGGAACCGAC AAGGTTATTT TTCACAGTAC AGGGCAGGGG
CGGGCTACGC TTCAGCCGGT AGTGGTTGAC TTGACGCCCT ATCAGAATCA GGAGATTTTC
ATTCGGATCA TCGACAATGA AACCGGTATT TCGCAGATCC CTTACATTCC GAACGATAAG
CTGGCGCATA TCAACTTCGA TGATTTTCAG TTCTATGCCT CTCGGCCGAA TTTCCCTAAT
GAGCTGAACC AGAAAGATAT TATCATTCTG CCACCGCTCG ATCCCGTTCT TCACGCTGGG
CTGTCGGGTA TTGAAGCGGC CAAAGTAATG ACGCTGCCTA AGGGCTTCAA GATCACGCTG
GCTGCCGCTG AGCCGGATGT TGTCAAACCC ATCTGCTTTA CGCTCGATCC ACGCGGTCGG
CTTTGGGTGG TTGAAGGGCA TACTTATCCC GTTCCGGCAC CGGAAGGCCA GGGCCGCGAC
CGCATCCTTA TTCTGGAAGA CACCAACGGC GATGGCACGC TGGACAGCCG GAAGGTCTTT
GCCGAAGGAC TGAATCTGGT TAGTGGCATC GAAGTAGGCA TGGGGGGCGT GTGGCTGGGG
GCGGCTCCGT ACCTGCTGTT CATCCCCACC GATTTTAAAA CGGACAAACC GTTGGGGCCA
CCTCAGAAAA TGCTCGATGG CTGGGGCACC GACGATACCC ACGAAGTCTT GAACAGCCTC
CGCTGGGGCC CCGATGGCTG GCTCTACGGC ACGCATGGCG TGTTTACGCA CTCCAACGTT
GGCAAGCCCG GCGCTCCTGA TTCTGAACGG ACGAAGCTAA ACGCCGGTGT CTGGCGCTTT
CACCCCACCA CGCAAAAATT TGAACTGTTC TCGGAAGGTA CCAGCAACCC CTGGGGGCTC
GATTTCAATG ATTATGGGCA TGCCTTCGTA ACGGCCTGTG TGATTCCGCA CATGTACAAC
ATGATTCAGG GAGGGCGTTA TTTTCGGCAG GCGGGCAAGC ACTTTAACCC CTACACCTAC
GACGATATCA AAACCCACGC TGACCACGTG CATTGGGTGG GCGAACGCGG ACCCCATGCG
GGTAACTTCC GGTCGGCGTC GGCAGGTGGT GGCCACGCGC ATTCGGGAGC CATGATCTAC
CTGGGGGGCG ACAGTTGGCC GAAGGAATAC CGGAACGATA TTTTCATGAA CAATATCAAC
GGAGCCAAGC TGAATAACGA CCACCCCGTT CGAGCCGGGT CGGGGTATAT GGTGACGCAC
AAACCCGATT TTCTGACCAT GAACGACTCC TGGTCGCAGT GGCTGAATAT GAAATATGAC
CCCAGCGGTT CGGTCTGGGC CATCGACTGG TACGATAAGA ACCAGTGTCA CAGCCCAAAC
CCGGATGTGC ATAACAAAAC GATGGGCCGG ATTTTCAAGA TTACCAACGA AAATGACAAA
TGGGTTCAGG TCGACCTTTC CAAAGCATCG GATATGGAAC TGGTCAAGTA CCAGCTGAAT
GCCAACGAGT GGTATGTTCG TCAGGCCCGG ACTCTTTTGC AGGAACGGGG TCCGAATAAA
AAAGTACACA AAGCCCTGAA AGAAATTCTG GCGAAAAATC CCGACCCGAC CCGGAAGCTA
CGTGCCTTGT GGGCATTGCA TGTCACGAAG GGGCTTTCAG AAAAGGAGCT GACGGATTTA
TTAGCAGACG AAAGCGACTA CGTTCGGAGC TGGGCGATTC AGTTATTGAC CGAGAACAAG
AATGTATCGC CCGAAACCCT GAAACGGTTT GCGGCTTTGG CGCAGAACGA CAACTCGGCG
CTCGTTCGGC TGTACCTGAC CTCCGCCATG CTTCGTCTGG ACCCGGCTCA GCGGTGGGAC
GTGATGGATG CGCTCGTGCA GAAAGTTCAG GATAAGGATG ATCACAATCT GCCGTTGATG
GTATGGTATG CGTCGGAACC GCTGGCTGCT ATCGACATGA AACGGGCACT GGCCATGGCT
CAGAAGTCGA AGCTGCCGAA ACAGCTGGCA TACACTATTC AGCGCATTGG TGCCATCGGT
ACGGATGATG CCAAGAAACT GCTCAAAGAA CTGAACGACC GCGTCGGTAA ACTCGACCAT
TCGCACGAGA ACCACGAAAT TCAGGAGTTG ATCGCCAAAG TGCTGGAAGA GTGA
|
|---|
| Protein sequence | MKRSYLFIPF VGAALALTSL QSPAQSTKAK PAVQATEKVD REYAMEATML GYFSKDGARN
PTLKANKGDR VRITITNGEQ MTHDISLEKL GLKSKSINDK GASTSITFTA DKSDVYYCSV
PGHRAAGMVG NFEVVEGALT TATVAGQVPM KNGKPLNLNF ETGTLADWTA TGDAFTNPLV
DQDPSPVHDK EMHIGFDGKY FLTSGGTVNY KQTGTLTSVP FTVTQPFAAF KVSGGALQDT
RVELVQAGTD KVIFHSTGQG RATLQPVVVD LTPYQNQEIF IRIIDNETGI SQIPYIPNDK
LAHINFDDFQ FYASRPNFPN ELNQKDIIIL PPLDPVLHAG LSGIEAAKVM TLPKGFKITL
AAAEPDVVKP ICFTLDPRGR LWVVEGHTYP VPAPEGQGRD RILILEDTNG DGTLDSRKVF
AEGLNLVSGI EVGMGGVWLG AAPYLLFIPT DFKTDKPLGP PQKMLDGWGT DDTHEVLNSL
RWGPDGWLYG THGVFTHSNV GKPGAPDSER TKLNAGVWRF HPTTQKFELF SEGTSNPWGL
DFNDYGHAFV TACVIPHMYN MIQGGRYFRQ AGKHFNPYTY DDIKTHADHV HWVGERGPHA
GNFRSASAGG GHAHSGAMIY LGGDSWPKEY RNDIFMNNIN GAKLNNDHPV RAGSGYMVTH
KPDFLTMNDS WSQWLNMKYD PSGSVWAIDW YDKNQCHSPN PDVHNKTMGR IFKITNENDK
WVQVDLSKAS DMELVKYQLN ANEWYVRQAR TLLQERGPNK KVHKALKEIL AKNPDPTRKL
RALWALHVTK GLSEKELTDL LADESDYVRS WAIQLLTENK NVSPETLKRF AALAQNDNSA
LVRLYLTSAM LRLDPAQRWD VMDALVQKVQ DKDDHNLPLM VWYASEPLAA IDMKRALAMA
QKSKLPKQLA YTIQRIGAIG TDDAKKLLKE LNDRVGKLDH SHENHEIQEL IAKVLEE
|
|---|
| |