| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_6287 |
|---|
| Symbol | |
|---|
| ID | 8730071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 7626527 |
|---|
| End bp | 7628122 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003391045 |
|---|
| Protein GI | 284041115 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.360151 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA TAACGTATAT ACTGCTGCCT TTTCTGCTGG CTTTGTCGGG GGTGTTGTTC
ACCGCCTGCG ACCGGGAGTT GCTGGATACC GTTCCCAACG ACCGCCTGTC GGAGAGCCTT
TTCTGGAGAA CGGAGAACGA TGCCAAACTG GCTGTTAACT CCCTCTACAC CGACCTCGAC
AGTACCAACA TTTTTAGCTG GGATGCGCTG ACGGACATTG CCCACGTAAA CCAACCGTTC
GATATTCAAT CGTATGTCGA ACAGGGGCAG TACGACGCCA CCAGCGCCAA GGTGTTTGGT
GAGTGGGCCA AAGCGTACAA GGGCATCCGG GCGTGCAATT ACTTTCTGGA AAATGTGAGT
AAAGTGCCGT CTACGAATAC GGCTTTGATC AATCAGTTCA AAGGTGAAGC CAGAGCGTTG
CGGGCGTATC AATACCTGAA ACTGGCGAGT CTGTTTGGCG ACGTTCCGCT GGTAACAACG
GCTATTTCGC TGGACGAAAG TCGTAATCTG GCCCGTGCGC CCATTGCTCA GGTCTGGGAT
TTTGTTGATA AGGAGCTGAA CGAAGCCGCT GGTCTGTTGC CTACCACCTA CGCTGCCGCC
GATAAAGGCC GCTTTACCAA AGGGGCTGCC CTGGGGCTTC GGGCGCGGGC CAACCTAATG
GCAGGGCGCT ACCAGCAGGC CGCCGATGCC GCCGATCAGG TGATTAAACT GGGTGTTTAC
GGACTGAATG ATAGTTACGA AAAGCTCTTC ACCTATGCCG CCGAAAACAA TAAGGAAGTG
TTGCTGGACC GGCAGTTCAT CAAAGACACC TACCCGGTCA ATGTGTTTGC GCTGATGGCT
CCTTATAGCC AGAAAAGTGC TAACAGTACC TTCGTGCCCA CCAAAGCACT GGTCGATATG
TACGAAACAA CCGCCGGGAA GCTGATTACC GATGCCACCA GCGGCTACGA CCCCGCGAAT
CCTTACGCTA ACCGCGACCC CCGGCTTAAG TTCTCCGTTT TCCTGACGGG CGATGTGCTG
CCGAGCGGAA TCACCTTCCG TCCCGAGCCA ACCAGCGGTA CGGCCGATGC CGTGGGGAAC
ACCTACATTG CGTCGACAAC GGGTTTTAAT ATCAAGAAAT ACATCAACGC CGAGGATTAC
GCCAACCCCG GCAACAATGG CATTAACATC ATTCTGCTAC GATATGCCGA GGTTTTGCTG
ACCTACGCCG AAGCGAAAAT TGAGTTGAAT CAACTGGACG CCAGTGTTAT TTCCGCTATC
AACACCGTTC GTAATGGCCG TTCCGACGTA AAACAGCCGT CTATCAACAG CACCGCCAGT
CAGGCAGAGT TACGGGCTAT TGTACGTCGG GAACGGATCG TTGAACTGGC GTTCGAAGGG
CAGCACCTGT TCGATATCCG GCGCTGGAAA ACCGCCGAAA CAGTGCTGCC CGGTCCTATT
TACGGGATTA CCTACAAAGC GGCTAACGGT GCCTTAACGA CTATTCAGGT AGTGGCCGTA
AACCGCACCT TCGATAAGTC GCGGCATTAC CTCTGGCCCA TCCCGCAGAA AGAACGTAAC
CTAACCCCCA CGCTCACGCA AAATCCGGGC TGGTAA
|
|---|
| Protein sequence | MKRITYILLP FLLALSGVLF TACDRELLDT VPNDRLSESL FWRTENDAKL AVNSLYTDLD
STNIFSWDAL TDIAHVNQPF DIQSYVEQGQ YDATSAKVFG EWAKAYKGIR ACNYFLENVS
KVPSTNTALI NQFKGEARAL RAYQYLKLAS LFGDVPLVTT AISLDESRNL ARAPIAQVWD
FVDKELNEAA GLLPTTYAAA DKGRFTKGAA LGLRARANLM AGRYQQAADA ADQVIKLGVY
GLNDSYEKLF TYAAENNKEV LLDRQFIKDT YPVNVFALMA PYSQKSANST FVPTKALVDM
YETTAGKLIT DATSGYDPAN PYANRDPRLK FSVFLTGDVL PSGITFRPEP TSGTADAVGN
TYIASTTGFN IKKYINAEDY ANPGNNGINI ILLRYAEVLL TYAEAKIELN QLDASVISAI
NTVRNGRSDV KQPSINSTAS QAELRAIVRR ERIVELAFEG QHLFDIRRWK TAETVLPGPI
YGITYKAANG ALTTIQVVAV NRTFDKSRHY LWPIPQKERN LTPTLTQNPG W
|
|---|
| |