| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5634 |
|---|
| Symbol | |
|---|
| ID | 8729408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6863213 |
|---|
| End bp | 6863908 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003390398 |
|---|
| Protein GI | 284040468 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00113498 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA AGAACCCAGG CCTGGATTTT CTCGAAGATC CGGACGCATT AGAAGGAAAA
TTAGAAGACG TTGGTGATTA TTTCCAACAG AACAAAAATA TTGTGCTCGG CATCCTTGGC
GGCATTGTAT TGCTGGTCGT TGGTTTCTTC GGCTACCGGT ACTACATCAG TACGCAGGAT
GAAACGGCTC AGGTTGAGAT GTTTCCCTCG CTTTATCAGC TCGAAGCCGA TTCGCTGAAG
AAGGCGCTTA ATGGCGATGG CCGAAATCCT GGTCTGTTGG CTGTTGCTGA CAACTACGGG
TCAACGCCAG GCGGAAATCT GGCCGAATTC TATGCTGGCC TTGGTCTGTT AAAAGAAGGC
AAGTACGATG AAGCCATCGA CCACCTGAAA AGCTTCAGTT CTTCGGACCT GTTGGTGCAG
GCGCGTGCCT ACGCCCTGAC AGGAGATGCC TATATGGAAA AGAAAAGCTT TGATGAAGCA
GCCGATTACT ATCGGAAAGC GGCTGATTAT AAGCCTAACA AATTCTTTTC GCCAGGGTAC
CTGCTTAAGT TAGGTGTTGC TTATGAGCAG GCAAAACAGA ACGATAAAGC GATTGCCGCT
TACAACGAAA TCATTGAGAA GTACAGTCAA TCGGCTGAAG CTCCTACTGC TAAGAAGTAT
AAATCCGTAC TCGAAGCAGC GGTCGGTGAG TCGTAA
|
|---|
| Protein sequence | MSKKNPGLDF LEDPDALEGK LEDVGDYFQQ NKNIVLGILG GIVLLVVGFF GYRYYISTQD
ETAQVEMFPS LYQLEADSLK KALNGDGRNP GLLAVADNYG STPGGNLAEF YAGLGLLKEG
KYDEAIDHLK SFSSSDLLVQ ARAYALTGDA YMEKKSFDEA ADYYRKAADY KPNKFFSPGY
LLKLGVAYEQ AKQNDKAIAA YNEIIEKYSQ SAEAPTAKKY KSVLEAAVGE S
|
|---|
| |