| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5454 |
|---|
| Symbol | |
|---|
| ID | 8729221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6634795 |
|---|
| End bp | 6637173 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | conserved repeat domain protein |
|---|
| Protein accession | YP_003390219 |
|---|
| Protein GI | 284040289 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.901976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.718716 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGT TTGTAAAATG GGCTGTTTTG CTCATTGGCT GGCCATTAAT GGCTATGGCT
CAGCTTCAGA TTTCTCACCC GATGGCGCGG CTTGTCGTGC AGCGTGGAAC CGATGGTAAT
GGTCGGCTGT ATCTGTCAGG GCGTTTTACC GGAACCGTAG ACAAGGTTGA GGCTCAACTA
ACGCCCGCTG TGGCGGGTCA GGGGGTAGCT ACGGCCTGGC AAACGGTACA GACGTCGCCC
ACCAACAATC TCTTTCTGGG TTATGTCACG GCCGCCGGGG GCTGGTATGT GCTCACTGTG
CGTACGCTCG TGGGCAGCAC GGTAGTAGAA CAGGCCAGTG TACAGCCGGT GGGTATTGGC
GAAGTATTTA TTACGGCGGG GCAATCCAAT TCGCGTGGGC TGGGCATTGG CGATAATGAC
CTTGGCACCA ATACCGACCG GGTCAATGCT ATCGACTCCA TCAATCACTA CTACCCCCAG
CCGCCATCCT TGCCAGCCCT GGTCTCATCC GGCGATCCTA TGCCGGTGCC ACGGTATAAA
GCCCTGACGG CCGCACGGCG AATTTTCCCG ATGGCCGAAA GCTCCTGGGG CTGGGGCGAA
TTAGGAGATT ATATTGTCAA CCGGTTCAAC GTGCCCGTTG CGTTCTACGT AGCTGGCTGG
GATGCATCGA CCATCGATAA CTGGTACAAA ACGGCGAATG GCATTGCAAC CTGTAACGCC
TATTACTGTG TTGGTGGCGA CTGGCCCAAC CTGCAACCGT ATACGAACCT GAAAAATGTA
CTTCGTTATT ATGGGGCGGT AGCCGGCGTA CGGGCCGTGT TGTGGCATCA GGGTGAGGCC
GAAGGAGATA TTGCGGCATC GAGTATTCCA AATTATGCTA ATCTGCTTAA AGCCGTTATT
GCTAAGTCGC GGGCCGATTT TAACGGGTGG AGCCTGCCCT GGATGGTGGC CAGAGCGTCG
TTTAACGGGC GCATTACCAA CTCTGATGTT GTGGCTCAAC AGCAGGCCGT AATCGATACC
CCCGGTTTCA ATGTATTTCA GGGGCCGCTC AACGATACCA TTCAAAACCG GGCTGCGAAC
ACGGTTGATG TGCACTTTAG GAATGCGTCG CGCCTGTCGC CCCATCCGCA GTATTACCTG
AACAAACCCA TCCCGACCGA TATGGGCCTG TCGAGGTTTG CACGTAACTG GAACAACAGC
CTTAGTAATT CATTTTTTCA GAATGCGCAG CCCATTACCC CAACGCAATT CGCCGTGACG
GGTAACGTGG CGGCTTACGT ACCGCCCGGT GCAACGATCC CGGTGTCGTT TTCTACGTTG
GGTACCTTCA ATGCGGGGAA TCAATGGGAG GTGCAGTTGC TGGATTCTCT GGGGCAGTAC
ATTAGCGTGC TGGGTACCGG TACCGCTAGT CCAATCAGTG TAACATTACC CAATTCCCTG
CCGAGCGGCC GGTTTCAGCT TCGGGTGGTG GCTTCCTCGC CCGCCATGCC CGCCGTACCT
TCCAATCTTT TCCTGCTGAC AAACAAGGCC GATGTAAGTC TGGCAATGGG AATCAACCAG
CGAACGCCGG AGGTGAACAA GCCAGTGATC ATAAGTCTGG CGGTCCGAAA CGATGGACCG
GGTCTGGCCC GAAGTGTTGT CGTTCGCAAC CGGCTTCCTG CTAACCTGAC GTTTGTCTCG
TCGAGCGACT TTACGCTTAC CGGGGCTATC CTTACCGGTT CGGGCATCGA CGTTTTGCCA
GGTGCCACCC GAACGCTGAG CTTTACGGCC AAACCCACGC TGGCCGGTAT GTTTCAGAAC
GCAGCCGAGG TAGCGCAAAC CGCCAGCGTC GACACCGACA GTCAGCCCAA CTCCGGTACC
GGCGATGGCC AGGATGATGC CGCTCAGCTC GATTTTCGAA CTCGTCAGGT TAGTTCAGCC
GTTTTTACAT CCCCCAACCC GGACCAGGTG CCTTTGCCCG CCGTCAGCAG TAGTCAGCCC
ACTCCCGATC CGGCCAAGGC CGATGTCAGT ATTGCCCTTT CTGTCAATAA CCGGACACCT
GCGGTAGGTG ATGTCATTTC GTATACGTTA ACCGTAACGA ATCAGGGCGG ATTGACGGCA
ACCGGACTCA GTATGTCGGC CTATTTACCC GCCGGGCAGA CATTTGTTCC GGGTGATGAT
TTCATTCTGT CTGGTGGAAG TCCGGTTGTT GGCGTGAGCA GTTTAACAAT GGGAAGTAGT
CGTTCGCTTC TTTTTCGAGC CCGGGTTACC GCTGTAGGGC GGGGCGTTTG CACGGCTCAG
GTTGTAACCG CCAGCGTGCC TGACCCAGAC TCCGTACCCG GCAATGGCGT GACCAACGGC
GAAGACGATA CTGCTCAGGT CGATGTGCGC GTACGGTGA
|
|---|
| Protein sequence | MLKFVKWAVL LIGWPLMAMA QLQISHPMAR LVVQRGTDGN GRLYLSGRFT GTVDKVEAQL
TPAVAGQGVA TAWQTVQTSP TNNLFLGYVT AAGGWYVLTV RTLVGSTVVE QASVQPVGIG
EVFITAGQSN SRGLGIGDND LGTNTDRVNA IDSINHYYPQ PPSLPALVSS GDPMPVPRYK
ALTAARRIFP MAESSWGWGE LGDYIVNRFN VPVAFYVAGW DASTIDNWYK TANGIATCNA
YYCVGGDWPN LQPYTNLKNV LRYYGAVAGV RAVLWHQGEA EGDIAASSIP NYANLLKAVI
AKSRADFNGW SLPWMVARAS FNGRITNSDV VAQQQAVIDT PGFNVFQGPL NDTIQNRAAN
TVDVHFRNAS RLSPHPQYYL NKPIPTDMGL SRFARNWNNS LSNSFFQNAQ PITPTQFAVT
GNVAAYVPPG ATIPVSFSTL GTFNAGNQWE VQLLDSLGQY ISVLGTGTAS PISVTLPNSL
PSGRFQLRVV ASSPAMPAVP SNLFLLTNKA DVSLAMGINQ RTPEVNKPVI ISLAVRNDGP
GLARSVVVRN RLPANLTFVS SSDFTLTGAI LTGSGIDVLP GATRTLSFTA KPTLAGMFQN
AAEVAQTASV DTDSQPNSGT GDGQDDAAQL DFRTRQVSSA VFTSPNPDQV PLPAVSSSQP
TPDPAKADVS IALSVNNRTP AVGDVISYTL TVTNQGGLTA TGLSMSAYLP AGQTFVPGDD
FILSGGSPVV GVSSLTMGSS RSLLFRARVT AVGRGVCTAQ VVTASVPDPD SVPGNGVTNG
EDDTAQVDVR VR
|
|---|
| |