| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5227 |
|---|
| Symbol | |
|---|
| ID | 8728993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 6379894 |
|---|
| End bp | 6380835 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF6 transmembrane |
|---|
| Protein accession | YP_003389998 |
|---|
| Protein GI | 284040068 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.579422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATGG CAGTAGAGTC TTCTCGCGCC CGGTATTGGC TTGGCGCGTT TTTCGTGTTT
ATGGCCGCTT TCTGTTTTGC CTGTAAAGGA ATATTGATCA AACTGGCCTA TCAATACCCC
ATTGATGCCA TTTCGCTGCT TACGCTGCGG ATGCTATTTG CCTTACCCTT TTACGTACTC
ATTCTACTCA ACCTGGTCCG TACTCAACCG CCGGTACAGC TAACGCGAAA GCAATGGGTC
AGTTTACTGA TGTTAGGTAT CACCGGGTAT TACTTCGCCA GTTTTTTCAA CTTTCTTGGG
TTAGTTTACA TTACCGCCAG CCTGGAGCGG ATTTTATTAT TTATTTACCC CACGTTTGTA
CTTCTGATTA ATGCACTTAG TTTTAAAAGG CCGATAACCC GCTTGCAGTT ATTATCTATG
GGGTTAACCT ACAGTGGTAT TTTACTGGCT TTCTGGGGAA ATATTGAAAC TGCTCACCAG
AAAGACATTA TACAGGGAGC GTTTTGGGTA ATTTTAAGCG GTCTGGTTTA TGCAATTTAT
CTGGTAGGCA GCGATGATAT GATTGCCCGG ATTGGGTCGC AGCGGTTTAC TTGTTACGCC
ATGATTGCGG CTACAGCTCC CGTTTTGATT CACTGCATTA TTCAGCATGG CATGCACCTT
ACGAGTTATC CAAAACCCGT TTATGTATTG GGGCTGGGCA TGGGAATTTT TGTTACTGTC
GTTCCAACGT TTATGATTGC GGAAGGGATC AAACGAATTG GGTCGGGCAA TGCCTCAATT
ATTGCCAGTG TAGGTCCCAT ATTCACAATT ATATTGTCAA CAATTATATT AGGCGAAATG
ATTAGTATTG GGCAGATAGT TGGAACATTC TTTGTTTTGG CAGGTGTCTT TTTAATAAGC
TGGCACGGTA AGATACAATT TGGCAATAAC CGGCAAAATT AA
|
|---|
| Protein sequence | MSMAVESSRA RYWLGAFFVF MAAFCFACKG ILIKLAYQYP IDAISLLTLR MLFALPFYVL
ILLNLVRTQP PVQLTRKQWV SLLMLGITGY YFASFFNFLG LVYITASLER ILLFIYPTFV
LLINALSFKR PITRLQLLSM GLTYSGILLA FWGNIETAHQ KDIIQGAFWV ILSGLVYAIY
LVGSDDMIAR IGSQRFTCYA MIAATAPVLI HCIIQHGMHL TSYPKPVYVL GLGMGIFVTV
VPTFMIAEGI KRIGSGNASI IASVGPIFTI ILSTIILGEM ISIGQIVGTF FVLAGVFLIS
WHGKIQFGNN RQN
|
|---|
| |