| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5164 |
|---|
| Symbol | |
|---|
| ID | 8728930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 6305300 |
|---|
| End bp | 6307741 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003389935 |
|---|
| Protein GI | 284040005 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACC TTTTCCTGAT TGCCTTCTGG TTGATGCCCC TGCTGGCGTT TGCTCAACTA
AACCCGGGCC GTATCAGCGG TACACTTACC GATTCGACCA CCGCTGGTGC TGTTCCGTTT
GCCACAGTAG CTCTCCAAAT CCCGGATGGT ACCCTTATAA AAGGGGTAAC AACGGATGAA
AAAGGAAGCT TTTCTATCGA ACAAATAGCT GTTGGGACGT ACAAACTCGT TATTTCTTTT
GTCGGCTATC GTACCCGAAC GATTGATAAA ATCGCGATCA CGGCCGAAAA GCCTGCTATT
GCCTTGCCCC CTATTAGTCT GGCTTCGGAT AGCCGCAGTT TGAAGCAGGT CGATGTGGTT
GGGCAAAAGG CGCTGGTGGA AGATAAAGGC GACCGGCTGG TGTACAACGC CGAGAGAGAC
GCGTCCAATA CGGGTGGAAC GGCTGCCGAT GTACTGCGGA AAGTGCCTAT GCTGACGGTG
GATCTGGACG GTAATCTAAA GATGCGCGGG AGTGGTAACA TTAAAGTGCT GGTCAACGGA
AAGCCGTCGA GTATTATGGC CCGCAATCTG GCTGATGCGC TGAAACAGAT GCCCGCCAAT
AGTATTAAGT CGGTAGAAGT GATTACCAGT CCCGGCGCCA AATACGATGC GGAAGGCTCG
GCGGGGGTTA TCAACATTAT TACGAAAAAA GCGGTACAGG GAACGAACGG AACGGTCAAT
GCCACGGCGG GTAATCTGAA CCGTTCGCTG GGTGGTAATC TGAACATCAA AGGCAAAAAG
CTGGGGTTTG CCGTTTCACT CAACGGGTAT CAATACCGCA ACATTGGTGA GAATACCAGT
ACCCGCACGT CGCTTTCGGC CGGTGTACCC ACCAGTGTTC TTCGGCAGAG TACGTATCGT
GATAATACCG GTACTGGCGG TTATGGCGAA ATGAGTCTCG ATTATGACCC CGATACAACG
AACCGGATTA ATTTTTCGGC CAATGCCTGG GGCGGTAATT TCCCCATGAA CAGTACCCTT
AACAGCCGCC TGACCGATGC ACAGGGCGGG CTGTTGCAGG CGTACCACCG CGATATTCAA
TTCCGGAATC CGTATGGCAA TACCGAATTC AATCTTGGCT GGACTAAGTC ATTCCGAAAA
CCGGGGCAGG AGTTCTCCCT GCTGACCCAA TACGCCCGGA TGCCGGACAA TTATTATTAC
ACCATTCGGC AAAACAACAT TGAATCGAAA GTGCCCACGT ACCTTGAACG AAGCACGAAT
CTGAGCCGTA ACAACGAATA CACATTTCAG GCCGATTACA CGCATCCGTT TACGGCACGT
ACCAAACGGG ATACGCTCAG CTTCAAGTTA GAAGCGGGAG CTAAAGCCAT TCAGCGCAGT
ATCGGCAGTG AGTTTGTCGT TGAACAGGCA ACTACCGGTC TGGATGCTGA CTATATGATC
GATCCGAGTC GCTCCAACGA TTTTATGTAC GATCAGGGGG TAGTATCCGG GTACACCTCG
CTGAAAGTCG ATTCGAAGCG TAAATGGAAT CTAACGGCTG GGGCCCGGCT TGAGCATACG
ACCATATCGG GGGATTTTAT CTCGACGAAG ACCGCGTTCA ACAGCCAGTA TCAGAATCTG
ATTCCGAGTT TTACGCTGGC AAAAACCCTT CGGGACAAGC ACACGTTTAA AGTAAGCTAC
ACGCAGCGGA TTTCCCGACC GCTGATCTGG TACCTGAATC CGTTCCGTAA CTCCAGTGAC
CCTAATAACA TTCAGACCGG CAACCCGTTC CTAAACCCTG AACTGACTCA TGCTACCGAG
TTGTCGTACA GCACCTTCGG GAAGGAAGGC TCGTCGTTCA ATGCGGCCCT GTTCTGGCGG
CAAACCAACA ATGCCATCGA GTGGCTTTCG ACGGTCAATG TACAGGGTGT TGCGCTGACG
ACACCTCAAA ATATTGGCCG CAATGCTAGC TACGGAGCCA ATATGAACCT AACGCTTCAG
CCTACTAAAC AGCTTAATGC TACGATTAGC ACCGATCTCA CCTATGTAGA CCTGACCAGC
CTGGCTCTCA ACCAGCGAAC AAACGGCTGG GTCTGGAGCG TAAGTCCTAA TGTGTCGTAC
AAACTACCGA AAGACCTTAC GATTCAGGCA AACGGCTACG TTGGGTCTGG TTGGATATCG
CTGCAAAGTC GGAATTCGGG CTGGTATTAT TACGGCCTGT CGGCCAAGAA GGAGTTGATG
GACAAGAAAA TCACTCTTAC CCTGAATGTC AATAACCCGT TCAACCGGAG CGTTCGGATA
ATCGGCGATC AGTTTGCGCC CAGTTTCACG GCTCAGAACA CGTCTATGTT CGTCAATCGC
TCGGTGCGGC TAACGCTGAG CTACAAGTTT GGGCAAATGA GCTCGGGTGG TAAGCAGAGC
AAAAAGATCC GCAACGACGA CAGTAAAGGC GGGGGGCAAT AA
|
|---|
| Protein sequence | MKNLFLIAFW LMPLLAFAQL NPGRISGTLT DSTTAGAVPF ATVALQIPDG TLIKGVTTDE
KGSFSIEQIA VGTYKLVISF VGYRTRTIDK IAITAEKPAI ALPPISLASD SRSLKQVDVV
GQKALVEDKG DRLVYNAERD ASNTGGTAAD VLRKVPMLTV DLDGNLKMRG SGNIKVLVNG
KPSSIMARNL ADALKQMPAN SIKSVEVITS PGAKYDAEGS AGVINIITKK AVQGTNGTVN
ATAGNLNRSL GGNLNIKGKK LGFAVSLNGY QYRNIGENTS TRTSLSAGVP TSVLRQSTYR
DNTGTGGYGE MSLDYDPDTT NRINFSANAW GGNFPMNSTL NSRLTDAQGG LLQAYHRDIQ
FRNPYGNTEF NLGWTKSFRK PGQEFSLLTQ YARMPDNYYY TIRQNNIESK VPTYLERSTN
LSRNNEYTFQ ADYTHPFTAR TKRDTLSFKL EAGAKAIQRS IGSEFVVEQA TTGLDADYMI
DPSRSNDFMY DQGVVSGYTS LKVDSKRKWN LTAGARLEHT TISGDFISTK TAFNSQYQNL
IPSFTLAKTL RDKHTFKVSY TQRISRPLIW YLNPFRNSSD PNNIQTGNPF LNPELTHATE
LSYSTFGKEG SSFNAALFWR QTNNAIEWLS TVNVQGVALT TPQNIGRNAS YGANMNLTLQ
PTKQLNATIS TDLTYVDLTS LALNQRTNGW VWSVSPNVSY KLPKDLTIQA NGYVGSGWIS
LQSRNSGWYY YGLSAKKELM DKKITLTLNV NNPFNRSVRI IGDQFAPSFT AQNTSMFVNR
SVRLTLSYKF GQMSSGGKQS KKIRNDDSKG GGQ
|
|---|
| |