Gene Slin_4782 details

Gene Information

• Locus tag: Slin_4782
• ID: 8728546
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 5824338
• End bp: 5827772
• Gene Length: 3435 bp
• Protein Length: 1144 aa
• Translation table: 11
• GC content: 57%
• Product: TonB-dependent receptor
• Protein accession: YP_003389559
• Protein GI: 284039629

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 36
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGTCAAC ATGAACCAGC GTTAGTGAAT CCTGACGTGC ATCGGACCGA CTGCGAATCG 
GGCCCCGACA AGCCGGATTG TTTTGCCGAT TTCCTATCTA ACAAAACCCT TAAAGGTATG 
AAAAAAAGAC TACCTGTGCC CACCGGCGGC TTACCCGGTT GGTCAGCCGA TCTACTTCCA 
CGATTAATGA ATCTTTCGCT TACCCAGCTT TTCCTGATGA TTGCCTGCAC GAGTTTCTCG 
TTTGCCTTCG ATGGCCAGGC GCAGGAATTA ATGAACCGTC CCGTAACCCT GAAGGTAGAG 
GGGCAGCGGC TCCGCGTGGT GCTGGCGCAA ATCGAACAGC AAACAACGGC CCGCTTCGTT 
TACAGCTCGA AGTCGATTGG TGTCGACCGC CCCATAACCA TCACCACCCG CGACAAACGG 
CTGGCCGACG TGCTGACTGA ATTACTCCGG CCGCTGAAAC TGAGCTACCG GATGGTGGGC 
GGTCAAATCG TGCTGGAAAG CGATGCCGAC GCCCATTCGC TGGTAACACC GGCAAACGAA 
GCCGCCGACC GCGCGCTGTC GGGAATGGTG ACCGACGAGA AAAACGCGGC CCTACCGGGC 
GTAAGTGTCG TGATTAAAGG CTCGAACCGG GGCTCCACTA CGGATGCCAA CGGGCAGTTC 
AAAATCACGG TGCCGGACGG TAACGCCGTT ACGCTGACGT TCTCATTTGT TGGCTACCAG 
AGCCAGGATG TGGTGGTTGG CAGTAAAACG ACGGTCAACG TGTCGATGGT ACCCGACGTC 
AGTGCGCTGG ACGAAGTTGT GGTCATCGGC TACGGGGCCG TTCGCAAAAA AGACTTGACC 
GGCTCGGTGG TGCAGCTCAA GAGTGAGCAA CTAAAAGAAG TACCGACCTC CAACGTGCTC 
GAAGCCGCGC AGGGTAAAAT TGCCGGGGCC GACATTACCC GCAGCAGCGG TCAGGCGGGG 
GCGCGAATAA ATATCTCCAT CCGGGGCAAC CGCTCCATTG GCGGCAACAA CTCCCCGCTC 
ATTATCGTGG ATGGTATCCA GTACAGTAAC CTGGAAGACA TCAACGCCAA CGACATCGAG 
ACGATGGATG TCCTGAAAGA TGCGTCATCT ACGGCCATTT ACGGGTCGCG CGGGTCGAAC 
GGGGTTATTC TGATCACGAC CAAGAAAGGT AAGCTGGGCA AACCCGACAT TTCGTTCAAC 
GCCTATTCCG GTATCTCGCA GGTGACGATG TACCCGAAGG CGATGGACAT TACCGGTTTC 
CGGGATTTCA AACGGGAAGC GTGGCGGGCC GCCGGTATCT GGAAAAGCCC CGCCGATGAT 
GCCGCCATTT TCACCAACGT AGCCGAATAC GACGCCCTGC AAAAGGGTCT CTGGACCGAT 
TATCAGGACG CGCTGATTCA CAACGGGCTT CAGCAAAACT ACCAGGTGGG TATTCGCTCC 
GGCACCGACC GGCTGAAATC GTACGTTTCG GTCGACTATT TCAATGAGAA AGGCATTCTG 
AAACTGGACG AACTGAGCCG CTACACGGGC CGACTCAATG TCGACTTTAC CATTAACGAC 
TGGATGAAAA TCGGGTTGCA AAGCCAGCTG ACGTACTACA ACCAGAGCGT ACGCCGGGAC 
CCGCTCAACC AGGCCAACAA GATCAGTCCG CTGGGATCGC TCTACGATGC CAACGGCAAT 
TTCAATTTCA TTATGCTCGA TGGACAGACC GCCAACCCCC TCTCCGACGA GCAGCCCAAT 
GTGTTTAACA ACTCAGTGCT GACCACCCGG GTGCTCACCA ATGGGTACCT CGAACTGACG 
CCCTTCAAAG GGTTCTCGTT CCGGAGTACG CTGGGCGTCA ACCTGGCTTC CATACGTGAT 
GGGGCCTATT CATCGCCCAA ATCCATCGAC CGCTCGCTGA CGGGCAAATC GCTTTCTACG 
TACAACACCA GCAACGGCCG CACCGTGAAC TGGGAGAACG TCATGACCTA CCAGCGGACC 
TTCGGCCAGC ACGCCGTTAC CATGACGGGC ATCGCCAGTT ACCTGGGCAA CACCTCCGAC 
AACTCGGCGG CTTCGGGCGT CAATCAGTTG CTGCCTTCGC AGTTGTTTTA CTCGCTGGGC 
AGTGCCACGG AAGAGATCAA GATCAATTCG GCGTTTTCCA AGAACAACCT GGTCTCGTTT 
GCCGCCCGCC TGAACTACGC CTTCCGCGAC CGGTATCTGC TCACGCTGAC CGCCCGCGAA 
GATGGTTCGT CGAAGCTGGC AGCGGGTAAT AAGTGGACGT TCTTCCCGTC GGCGGCTTTC 
GCGTGGCGGG TTATCGAGGA GAAATTCATG CAGGACGTAA AGGGCCTGAG CGACCTCAAA 
ATCCGGGCAA GTTATGGCGT AGCGGGTAAC GACCCATCCG GCCCTTACGC GACCCAGACA 
ACCCTGACCC GGCTGGCTTT TGGTTTCGAT GACATCTCGG CTCCGGCCTA TACCTTCTCC 
CGAAACGTGG GCAACACCGC CCTCGGCTGG GAATTGTCGA ACACGAAGAA CCTGGGCGTG 
GATTTCGGGC TGTTCAACGG GCGCGTCAAC GCATCGCTCG ACTACTACGA CACCCGCACC 
TCCGATCTGC TGCTGGACCG GGGACTTCCA CCAACGACCG GCGTAACGAC GGTGAAACAG 
AACATCGGCA AAACCCGCAA CCGGGGCCTT GAGCTGTCGC TGGGAAGTAC CAACATCCGC 
ACCCAGAACC TGACCTGGAG CAGCAACGTC ACCTTCACTA AGAACAAGGA AGAAATCACC 
GAACTGGTGA CCGGCTCCAA CGACATCGGC AACGGCTGGT TCATTGGCTC GCCCATCAGC 
GTGTATTATG ACTACGAGAA ACTAGGCATC TGGCAAACTT CGGAAGCCGA CCTGGCCGCC 
AAACTCGCGC CCACGCAGCT ACCCGGCGAA ATCAAAGTCA AAGACCAGAA CAACGATGGC 
AAGATCGACG CCGTCAACGA CCGGATTATC CTGGGAACAC CCCGCCCAAA ATGGAGTGGC 
GGCTTCGACA ACACGGTTAA ATTCAAAGGA TTCGATCTGA ACGTGTTCCT GTATGCCCGT 
GTGGGCCAGA TGATCAACTC CGACCGGTCG GCGCGTTTCG ACCAGCAGGG AGTCGGCAAC 
AGCACGGCTG GGCTAGACTA CTGGACGCCC GAGAATTCAA CCAACGCCTA TCCGCGCCCG 
AACAAGAACG GCGGTTTGAA ATACCTCTCC ACGCTGGGTT ATCAGGACGG CACCTACGCC 
CGCATCCGGA ATATTACGCT GGCGTATAAC GTCCCAGTCA AAGTGCTTCC CAAGGTGGTT 
CGGGGCGTTC GCGTGTATGT AACGGGTAAG AACCTGGTCA CCTTCACGAA GCTGAATTAC 
GACCCCGAGC GGGGTGGTTC GGAAAACTTC CCCATGACCA AACTGTACGT CTTCGGCCTG 
AACGTCAACT TATAA 

 

Protein sequence

MRQHEPALVN PDVHRTDCES GPDKPDCFAD FLSNKTLKGM KKRLPVPTGG LPGWSADLLP 
RLMNLSLTQL FLMIACTSFS FAFDGQAQEL MNRPVTLKVE GQRLRVVLAQ IEQQTTARFV 
YSSKSIGVDR PITITTRDKR LADVLTELLR PLKLSYRMVG GQIVLESDAD AHSLVTPANE 
AADRALSGMV TDEKNAALPG VSVVIKGSNR GSTTDANGQF KITVPDGNAV TLTFSFVGYQ 
SQDVVVGSKT TVNVSMVPDV SALDEVVVIG YGAVRKKDLT GSVVQLKSEQ LKEVPTSNVL 
EAAQGKIAGA DITRSSGQAG ARINISIRGN RSIGGNNSPL IIVDGIQYSN LEDINANDIE 
TMDVLKDASS TAIYGSRGSN GVILITTKKG KLGKPDISFN AYSGISQVTM YPKAMDITGF 
RDFKREAWRA AGIWKSPADD AAIFTNVAEY DALQKGLWTD YQDALIHNGL QQNYQVGIRS 
GTDRLKSYVS VDYFNEKGIL KLDELSRYTG RLNVDFTIND WMKIGLQSQL TYYNQSVRRD 
PLNQANKISP LGSLYDANGN FNFIMLDGQT ANPLSDEQPN VFNNSVLTTR VLTNGYLELT 
PFKGFSFRST LGVNLASIRD GAYSSPKSID RSLTGKSLST YNTSNGRTVN WENVMTYQRT 
FGQHAVTMTG IASYLGNTSD NSAASGVNQL LPSQLFYSLG SATEEIKINS AFSKNNLVSF 
AARLNYAFRD RYLLTLTARE DGSSKLAAGN KWTFFPSAAF AWRVIEEKFM QDVKGLSDLK 
IRASYGVAGN DPSGPYATQT TLTRLAFGFD DISAPAYTFS RNVGNTALGW ELSNTKNLGV 
DFGLFNGRVN ASLDYYDTRT SDLLLDRGLP PTTGVTTVKQ NIGKTRNRGL ELSLGSTNIR 
TQNLTWSSNV TFTKNKEEIT ELVTGSNDIG NGWFIGSPIS VYYDYEKLGI WQTSEADLAA 
KLAPTQLPGE IKVKDQNNDG KIDAVNDRII LGTPRPKWSG GFDNTVKFKG FDLNVFLYAR 
VGQMINSDRS ARFDQQGVGN STAGLDYWTP ENSTNAYPRP NKNGGLKYLS TLGYQDGTYA 
RIRNITLAYN VPVKVLPKVV RGVRVYVTGK NLVTFTKLNY DPERGGSENF PMTKLYVFGL 
NVNL