| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4761 |
|---|
| Symbol | |
|---|
| ID | 8728525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5798541 |
|---|
| End bp | 5800313 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003389538 |
|---|
| Protein GI | 284039608 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATAA ACTATAGCTG GCTTCTCCTG ATCGGGCTTT TTGCCGCCGG ATGCAGTGAG
CTGGAACAGG TTCCTCAATC GACAGCCTCC AAAGACGCGG TATTTAGCAG CACCGGCGGG
CTGGATTTAT ATGCCAACTC GTTTTACGAT AACCTGCCCT CCGGCAACGA CATTATCCGC
AGCGACGAGA TGGCCGATTT CTCGGCCCGG ACCCAAGTGC CCGACTTCCT ACGGGATGGC
GCGTATGGCC CGCGTCAAAG CACCGGCTGG GATTGGCGGC CCCTACGGAA CATCAACTAT
TTTATCGCCA ACTGCACAAA CCCGGCCGTT CCCGCTGAAA CCCGTCGGCA TTATATCGGG
CTGGCCCGGT TTTTCAGAGC CTGGTTTTAC TTCGATAAAG TAAAACGCTT TGGCGATGTG
CCCTGGATTG GCAACGCTAT GAATGTTGAT GATGCATCCT TGTATAATGC TCGCGACCCA
CGCGCTACGG TGATGGATTC GGTACTGGCC GACCTCGATT ATGCTACCCA GAACATCCGC
ACAACGGGCG ACAATACCCG TAGTCTGATT ACCAAATATG TGGCTTATGG CTTCAAGTCG
CGGGTGTGTT TGTTTGAAGG GACGTTCCGG AAGTACCGCA CCAGTTACAA CCTGGGCAGC
ACCGCCGATA AGTGGCTGAA CGAATCGGTG AAAGCGTCCG AGGTGGTCAT GAAAGAAGGC
GGGTTCAGCC TCAACGAAAC GGGTGGCACG GATAAATCTT ACCGGCAGCT GTTTACCAAC
AACACGCCGG TTACCAACGA AATCATGCTG TCGGCTGTTT CGGACGCTAC GCTGAGTGTG
TATAACGACG CCAACTGGTG GTGGACCAGC GCGACCTATG GCTCGCGGGT GAGCCTGATC
CGAACCTTTG TCAACACCTA CCTGAACATC GACGGAACAC CCTTTACCGA TAAGCCGGGC
TACCAGACAA TGACGTTCAT GGACGAGGTA AAGGGTCGCG ATAAGCGGTT GCAGCAAACG
ATTCGGCTGG GCAATTACAC CCGTACGAAC GCCGGGGCAG TTGAAGCCGC GCCACCTGTT
TTCTCTTATA CGTACACGGG CTATATGCCA ATCAAGTGGT CGCTGGATGA TACGTATTAC
GATGGTGGCA CGCGCAACAT CAACTCCATA TCCATCATGC GGTATGCCGA AATCTTGCTG
AACTACGCCG AAGCGAAAGC CGAACTCGGT ACGCTTACCA ACGAAGACTG GGCAAAAACC
GTAGGTGCCC TGCGGAAACG AGCGGGCATT ACGGCAGGGT TATCGGTAAA ACCGGTGGTG
GTTGACACCT ACCTGAAAGC CAACTACTTC CCGGACATTA CGGATGCAGC CCTGTTGGAA
GTTCGTCGGG AGCGGGGTAT CGAGCTGGTA TTCGAGGGCT TCCGGTTCGC CGACATCATC
CGCTGGAATC GCGGTCCGTT GATGGAACAG ACCTGGAATG GCTTTTATGT ACCAGTCCTC
GACAAACCGC TGGACTTGAA TGAAGACGGC AAGAACGATG TGGTTTTCTA TAAAGTCAAA
CCCGCTACGC AACTGGCTGG CGTAACCTAC ATCAACGTAG CCGAGACGGT TAACGGCGTA
CCCAATCCGC AGCGGCTCAA AAACGACACC TCTGGCGAGT TAACCTGGCT GAATAATATC
CCCAGAAAAT GGGATGAAAA ATTTTATCTC TATCCTATTC CGGAGAACGA CCGGCTGATC
AATCCCAAAC TAGGCCAGAA CCCCGGCTGG TAG
|
|---|
| Protein sequence | MTINYSWLLL IGLFAAGCSE LEQVPQSTAS KDAVFSSTGG LDLYANSFYD NLPSGNDIIR
SDEMADFSAR TQVPDFLRDG AYGPRQSTGW DWRPLRNINY FIANCTNPAV PAETRRHYIG
LARFFRAWFY FDKVKRFGDV PWIGNAMNVD DASLYNARDP RATVMDSVLA DLDYATQNIR
TTGDNTRSLI TKYVAYGFKS RVCLFEGTFR KYRTSYNLGS TADKWLNESV KASEVVMKEG
GFSLNETGGT DKSYRQLFTN NTPVTNEIML SAVSDATLSV YNDANWWWTS ATYGSRVSLI
RTFVNTYLNI DGTPFTDKPG YQTMTFMDEV KGRDKRLQQT IRLGNYTRTN AGAVEAAPPV
FSYTYTGYMP IKWSLDDTYY DGGTRNINSI SIMRYAEILL NYAEAKAELG TLTNEDWAKT
VGALRKRAGI TAGLSVKPVV VDTYLKANYF PDITDAALLE VRRERGIELV FEGFRFADII
RWNRGPLMEQ TWNGFYVPVL DKPLDLNEDG KNDVVFYKVK PATQLAGVTY INVAETVNGV
PNPQRLKNDT SGELTWLNNI PRKWDEKFYL YPIPENDRLI NPKLGQNPGW
|
|---|
| |