Gene Slin_4599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_4599 
Symbol 
ID8728363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp5579374 
End bp5582463 
Gene Length3090 bp 
Protein Length1029 aa 
Translation table11 
GC content54% 
IMG OID 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003389376 
Protein GI284039446 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.645634 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACCAG TCTCTGCCTT CGCCAATGCA CTGCCTAGTC CGGATTTAAG CTCTCACCTC 
AGCAGTGCGG TACTGTATCA TGCTCAGCGA AATGCCGATG GGAAAATCAC GGATTTTAGT
CTGGTTATGC TCAACTCCTC TACGCAGGAG ATGTGGGGGT ATCCGCAGCG GGAACTGACC
GGGCGTTCGA TCAGTCAACT ATTTACGGTG GCCGACCGGC AGTTCTTACT TCAGCAATTC
AGCGTGGTGG TAGAGCGTGG GCGGGCCGTT CGGTTCGAGA TGGAATACAG TCGGCCGGGT
AATCAGTCGG TGCAGGTGTA CGATATGCTG GTCACTAAGC TGGAAGATGG CGTGCTGGTT
AATTACGGCG AAATCGTACC CCCTGCCCAA ACAGAACGGG TGCCGCAGCA ACAGACCGAC
TTGCTCCGGA AGCTCTTTCA CGAATCGCCC TGTAGTATGC AGTTGCTGGA GCCCGTTCGC
GATGCCGAGG GTAAAATCGA GGATTTTATC TGCCGGATGG CCAATCAGGC CAGCCTGAAT
CAGATGAGGG TGGTTGAAAG TCAGGTAGTT GGCAAGCGGA TGCTGCCCCT TTTTCCCAGC
CTTCTGTCGT CGGGCGTGTT CGACCGTTTG GTGACCGTAG TCGAAACGGG CGAGACTCAG
CAGCAGGAGC TTTATTACAA AGGTGATGAT GACCAGATCT GGATCGATGC CAAATACATC
CGACATAACG ATGGGGTGAT CAGCATGAGT TTTGACCTGA CAGCTACCCG ACTGGCCGAG
CAGAAGTATC AGCAGCAGGC CGAGTTGTAC AAGACCATTC TGGATACGGC GTTAACGTCC
ATCACGGTTC TGGAAGCCGT GCGGGATGCC GACGACAAAA TCATCGACCT GCGCTATACC
CTGGTCAATC AGGAGCGATT GCGGTTGGCA GGCAAGCCCG AATCTTTTTT TCTGGGTAAA
CGCCTGACGG AGGTCTACCC GGGAATGGTT GAATCGGGCG TGTTTCACCG CTGGGTAGAG
GTTATCGAAA CCCGGCAGTC ACAGAAGTTC GAAGTAAACT ACCACTATGA TGGTTTCGAC
GACTGGAGCC TTTGCCTGGG GTCGCCCTTT GGCGATGGCA TTGTCGTTTC GTATACCGAT
ATCACGAAGC AAAAAGAGGA TGAGTTGCAG GCCCGCCAAC AGGCCGAGTT ACTGAACAGC
ATTCAGAATA CGTCGCAGAT AGGTATTTCG GCCTGCAAAT CCATTCGCGA TTCGGCGGGT
ACAATTGTTG ACTTTCAGCC TATATTCCGG AATGCGACGG CCTCCCAGTT GCATCGTCAT
GCACCGAACG AGCCAATTAA AGCTACCCTG CTTGAAGATA TGCCCAGCCT GAAGCCGTCA
GGTGTGTTTG ATCGCTATGT ACGGGTGGTC GAAAGTGGCC AGCCCGATCA ATTTGAACAG
CACTTTAGTA ATGGCGGTCT TGATGGCTGG TTTGAGTTCT CGGTGCAGCC CTGGGAGGAT
GGATTCGTTC TGAATATCCT CAATACAACC AGCTTGCGTC GGGCAGAACG GGAGAAAGTA
CAGCAGAGCA TCATACTTCA GCAGGTTATC GACAACTCCC AGGCCGGACT GGTGCTGGCC
CAGCCTGAGC GCGACGAATC GGGTACGATC GTCGACTTCC GGTATGTGCT GACAAATGAG
TACAACGCCC GCACAACGGG CTGGACGGTG GCCGAGATGG CCGATGCGCT GGTGAGCAGC
CTGTTTCCCG GATGGCAGGA TTCGGACTTG TTCCGTCGGT ACGTCGAGGT TGTTGAGAGT
GGGCAGGCAC AGCGACTGAC CTTCCCGTAC GAAGCTTATC AAATGAATGG CTGGTTCGAT
GGTTCGTTTA ATTGCGTAGA CGGCTATCTG CTCTATACGT ATACCGATGT GACCGCGCTT
AAAGAAGCCG AACTGGCTCA GCAGCAGTAC GCCAGCTTAC TTGAGCAGGT CATGAATATG
ACACCTGCCG CCATTGTACT GAATGAGAGT ATCCGGGATG AGACCGGCCA AATTGTTGAT
CTGCGCATGG TCAGGCTGAA TCATATGGCT ACCAAACTGA TGAAAAACCC AATCGATAAG
GTTCAGTTTC GGCGCGTCTC CAAGTACATT CCCGGCTCGC TGGATACGCC CCTGTTCGCG
CAATGCAAGC AGGTGATCGA AACGGGTAAC CCTGCCCGTC TGGAAGTTCC CTGGGACGAC
CGTTGGTATG ATTTCTCCCT GGCCCGTTTT GGCGATGGTG TTTTGCTTAC CGTACAGGAT
ATCACCCCTA TGCGCGAATA CCGGCAGAAA CTGGAACTGG CAAACCTCGA ACTCAAACGG
TCCAACGAAA ATCTACAGTC GTTCGCCTTC GTTTCCTCGC ATGATTTGCA GGAGCCCCTT
CGCAAAATAA TATCGTTTGC AGACATTCTG AGTACCCAGT ATGCCGGGCA GTTCGATGCA
CCGGCTACCG ATATTGTGAA GCGAATCAAC ACGTCGGCCA ACCGGATGCG TCTGCTTATT
CAGGATCTGC TGGCCTACTC GCAGGTCGAC ACACGGGAGG ACTCGTTCGA GCCGGTCAAC
CTAACCCGGT TGATTGGAGA ACTACAGGAA CATGAACTCT GGATGACCAT CCAGCAGAGT
AACGCCGAAA TCCACCTTGG CGAGTTGCCA ATTCTCATGG CCGACCGGCT GCAAATGCGA
CAGCTGTTCC AGAACTTGTT ATCCAACGCT ATCAAATTTT GCCCGAAGGG TGTAACGCCC
GACATCACCG TGAGCAGCCG ACTGGTTAAG CACTCCGACG TATCGGTGAA GTTGATGTCG
GCCAAACTGG AAAAGAACCG GGCGATGGAA ACATGGTTCG CTGAAATTTC GGTAAGCGAC
AATGGGATTG GCTTCGATGA GAAGTATCTG GATCGCATCT TCCAGGTTTT CCAGCGGCTG
CACGGTCGAA GTCAGTACAG CGGGTCAGGT ATTGGACTGG CCATTTGCTA CAAGATCGCT
GAACGGCACA ACGGAGCCAT TACCGCCAGC AGCCAGCCCG GCCAGGGCAG TACCTTCCGG
GTCTACCTGC CTATCCGGAA GGAAAGGTGA
 
Protein sequence
MIPVSAFANA LPSPDLSSHL SSAVLYHAQR NADGKITDFS LVMLNSSTQE MWGYPQRELT 
GRSISQLFTV ADRQFLLQQF SVVVERGRAV RFEMEYSRPG NQSVQVYDML VTKLEDGVLV
NYGEIVPPAQ TERVPQQQTD LLRKLFHESP CSMQLLEPVR DAEGKIEDFI CRMANQASLN
QMRVVESQVV GKRMLPLFPS LLSSGVFDRL VTVVETGETQ QQELYYKGDD DQIWIDAKYI
RHNDGVISMS FDLTATRLAE QKYQQQAELY KTILDTALTS ITVLEAVRDA DDKIIDLRYT
LVNQERLRLA GKPESFFLGK RLTEVYPGMV ESGVFHRWVE VIETRQSQKF EVNYHYDGFD
DWSLCLGSPF GDGIVVSYTD ITKQKEDELQ ARQQAELLNS IQNTSQIGIS ACKSIRDSAG
TIVDFQPIFR NATASQLHRH APNEPIKATL LEDMPSLKPS GVFDRYVRVV ESGQPDQFEQ
HFSNGGLDGW FEFSVQPWED GFVLNILNTT SLRRAEREKV QQSIILQQVI DNSQAGLVLA
QPERDESGTI VDFRYVLTNE YNARTTGWTV AEMADALVSS LFPGWQDSDL FRRYVEVVES
GQAQRLTFPY EAYQMNGWFD GSFNCVDGYL LYTYTDVTAL KEAELAQQQY ASLLEQVMNM
TPAAIVLNES IRDETGQIVD LRMVRLNHMA TKLMKNPIDK VQFRRVSKYI PGSLDTPLFA
QCKQVIETGN PARLEVPWDD RWYDFSLARF GDGVLLTVQD ITPMREYRQK LELANLELKR
SNENLQSFAF VSSHDLQEPL RKIISFADIL STQYAGQFDA PATDIVKRIN TSANRMRLLI
QDLLAYSQVD TREDSFEPVN LTRLIGELQE HELWMTIQQS NAEIHLGELP ILMADRLQMR
QLFQNLLSNA IKFCPKGVTP DITVSSRLVK HSDVSVKLMS AKLEKNRAME TWFAEISVSD
NGIGFDEKYL DRIFQVFQRL HGRSQYSGSG IGLAICYKIA ERHNGAITAS SQPGQGSTFR
VYLPIRKER