Gene Slin_4181 details

Gene Information

• Locus tag: Slin_4181
• ID: 8727940
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 5035888
• End bp: 5041140
• Gene Length: 5253 bp
• Protein Length: 1750 aa
• Translation table: 11
• GC content: 51%
• Product: conserved repeat domain protein
• Protein accession: YP_003388966
• Protein GI: 284039036

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.46583
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 24
• Fosmid unclonability p-value: 0.246387
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCTTTC TTAGCTGCTG TAGGCTAACA GCTGGTCTGG TGTTGCTTCT GCAACCCTTG 
CTGGTTTTCC CACAAAATCA ACCCAGATCC ACTCCGCAGG ACACAATACG CCTTTTGGCT 
GAAGAAGAAC AGCGACGGCT GATGGACCCC GCCACCGGCA CGGTCCCCTA CGAACGACTC 
GATGCAGCAC GGCAGCAACT AAACAACCGG GCAGTAACTG CAAACGGTGG TCCGGTTGCG 
CAGAGTGGCA TCCCCAACAT CACCTGGCAG GAGCGCGGCC CCAGCAACCT GGGTGGTCGT 
ACCCGCGCTC TACTATTCGA CCCCAACGAC CCGACGCGTA AGAAAGTCTG GGCCGGTAGT 
ATGTCCGGAG GCCTTTGGTA CACAAACGAC ATTACTGACA CGAACGCAGG CTGGACGCCC 
GTGAGTGATA CCTGGGAAAA CATGGTCGTG ACAGCCCTTG CCGCCGATCC ATCGAACCCA 
CAGGTCATGT ATGCAGGCAC GGGAGACATG TTCAATTATG TAACGGGGGG CGGAATCTGG 
AAAACGACCA ATGGCGGTAC AACATGGACA CGACTCAGCA ACACCATTCC GGGTGGCAAT 
CCACCCGCGC TCAGCTACAG TTTTGGCTAC ATTCAGCGTA TTGTAATCAA CAGCAGTGGC 
CAGGTGTTTG CGGCTACACG AATTGGCGTA GTTCGCTCGG CTGACGGGGG AACTACCTGG 
CAGTATGCAC TGGCTCCCAA CCAGGGCATC GGCCTAACGG GGTCAACAGG CAACTACAAC 
AACGATCTGG CTACCGATCT TGAATTGGGC ACCGATGGCA TCCTATACGC TGGTTTTAAC 
CCAAACCGGC TTTTTAGATC GACGAACACA GCAGGCACAT CATGGACTGA AATCACCCCG 
GCAGGCGCAT CAGGTGGCGA ACGTACTGAG TTAGCACTAG CCCCCTCAAC CAGCGGTACC 
AATCAGGTGA TCTATGCCGT ATTACGAGCC TATAACGGCA GTAGTTATTA CCAGGACATC 
AAATGGTTCA AGAAAAGCAG CAATGCGGGT GTTACCTGGA CGGATGTGCA AATTCCCGTA 
TTTAGCTGGG GGGATCATTT TACGAGCAGC AATGGGTATT ATTCAATGAA CCTTGTTGTC 
CATCCAACGG ATGCCAATAC CCTGTATGCC GGTGGTTATA ACTGGTTCCG CTCCGTTGAC 
GGCGGCAACA GTTGGAGCGT TCCACTTACG AACACGTATA CCAGGTATCA GGCATTATTG 
TTCCAGCCGG GTAGTACGCT ATCAGCAGCA TTTTGTAGTG ATATAGGCAT TTCCTGGTCG 
TCGAACTGGA ATGATGTAAG CCAGACACAG CCAACGATTC TGGATAAAAA CAATGGATAT 
AGGGTAAATG AAACCAATTC AGTTGCCATG AAGTCCAGTC CCGGCAGTGC CTACTTACTG 
GGAACCAGCC GGAGTGGTGC ATTTAAATTA ACGGCCAATG GCCTATCGGC AGGCTCTATT 
TTTTATACTT ATTCTTCTGA CATGGGACCG GCCTTCATTG ACGAAGAAAC CCCCGGCAGC 
CAGTTATTTA CAACAAGCGG AGGCAGTGTT CTATCGTACG ATGGCAGCAA TTATCAATTC 
ATAACCGGAC TTACCTCAGT TGGTGGAGTA GCCGACTACG ATAGTCCTTT GAACACACTT 
TACATCGCTG ATTACAATTA TACTACCAGT CAATATTTCC TTCGCAAAGT AACAGGTATA 
GGTTCGTCTA TCACGACTGC GCTGGTCCCG TTGACCGGGA TGACAAACTC ATTATCCTAC 
CTTAAATTAA GTAAAGACCG GACGGCCTTA TTTGCAGGTA GTTACCCAAA CAAACTATAC 
AAGATTACCA ATCTTGATCA GGCCAGCCCT ACGGTTATGG CTATCGACAA TGGGGCCTTT 
CCTCAATACA CTACGGTTGC GTGCATCGAT ATTGGGGCAA CTGATAATGA ACTGCTGGTC 
ACGCTCTCCA ACTTCGGTGT TCAGTCGGTT TGGTATACGA ATGATGGCGG GCAAAGCTGG 
GTGGGTAAAG ATCAATCGAA CTACGGCCTT CCCGATGTAC CCGTCCGAGC GGCCCTGTTC 
AATCCCCAGA ATCGTAAACA GGTACTTTTA GGAACCGATG CCGGTATCTG GTCGACAACC 
GACATCACGG CTACCAATCC TGGCTGGGCA TTTTCCAGTA CGGGTATGGG TACGTTTCGG 
GTAAATCAGC TTAAATATAG ATCATCCGAC GGACGTGTAG CCGCAGCCAT CTATGGGCGT 
GGCATCTGGA CGACCGATGC CTTTGCTACA CCATATACGG CCCCTACAAT AGCTATAACG 
TCTATTTCCA ATTCGACGCT CTGTGCGGGC AATACCTTCA GTGTGGCGTT TAGTACAGCC 
GGGCCCGCCT TTAATTCGGG AAATACATTT GAGGTCTGGC TATCGGATGC GATGGGGAAC 
TTTACAAACG CCCAAAAAAT TGGCAGTGGC ACCAGCAGTC CGATAACAGC AACCCTGCCA 
AGTGGGTATA ACGCCGTTCC CTATGGCACA AGTTATCAGG TAAAAATCAT GTCAACCAAC 
CCTGATATAG AAAGTAGCCC AAGCGGAATT TTGGCGATTG GAAACCTGAG AAGCGCCGAA 
ACTCTTGACC GGCTGGCTGG CCTATCCACG TATTTTTCCA GCTATGGCAT TATTTGTCCG 
GGAAGTCGTG CCACACTCAA AACGTATGCC TATTCAACCA ATTATTCAAG GATAGAACCA 
ACCAGCTATC AATGGTTAGT TGGCAGTTCT CCCATAAGTG GTGCAACATC AGCTACGATT 
TCGGTTCAGC AGGCGGGTAC CTACAGTGCT GTTGTCAAAC AGGCAGGCTG TACCGTAACG 
AGTTATTCGT ACATACTTGC CGTATCTACA AACCCTTATA ATGACCTACT ATCTGACTCT 
TATTGGGAAC CACAATGTGA TGACCATCCG TTAAAATTGA CATCCATTTA TCCCGGCGAA 
ACGGCTCAAT TTCAATGGAG CCGTGATGGC GTAGATATAG CCGGAGCTAC CAGTTATACC 
TATAACGCTT CGCAAACGGG TAGCTATTCA TACCGGTTCA CAGATGGTAG TTGTGCCGTA 
ACAAGCAGCA AGGAGTATGT ACAGTTTGGA CGTGCGCTCT CAGCCCCCAT TTATTTATCA 
TGGAATAGTG ATTCCCTACT TTGCTCATCA GCGACCAATT ATAATGCCGC TATCTATACA 
AATATCCCTC CAGCAAACGA TTACACCGTT CAATGGTATC GCGATGGAAC TATCATTTCG 
GGAGCTACCT CCAGGTCTTA TTATCCGTAT CAGCCGGGGG TGTATTCTAT GTTGCTGAAG 
CAGGGAAGTT GTCAAACACG CAGCAACGCT ATTGTTATTA GTCAATCGGA CCAGATCAAG 
GCCAGCATTA TCTATTCGTA CCCTAGTAAG GCAGCCTGCC CCGGCGAGAC TCGCTATCTG 
TACGCTTTTC CATCTAACGA TGGCAGTTTC CAGTGGCAAA AAGACGGTGT GGATATAGCG 
GGAGCAACGT CTTCAAGTTA TCCGGCGAGT GTATCAGGTA AGTATACAGT ACGGATAACA 
AAAGGAAGTT GTTCCGCTAC CTCCGACCCT GTATCTCTTA CATTTTCAAC TACCATTCAG 
CCCGTAATTA CGATTGCCGA GTCCAATATG GGTGAATCAT GCACTGGGGC TAACCCCTAT 
GTTAGTGATT CATACAATCA GAGTGGCTAT CAATATCAAT GGTATCGAAA TGGTACTCTC 
TTAAATGGAA CAACAAACTC AGGATTCTAT ACAACTCAAT CAGGCGTTTA TTCAGTACGG 
GTAACAAACG GCAGTTGTAC AGGTTTGTCG AAAGATGTGT ATCTCTCAAT CGGTAACGGC 
TCCGTGGCAA AGCCCAAAAT TACTATTACC CCCATGACCC GCCAGTTGTG TTTAAATAAT 
TCGTTGTTTT TATTCGTACG TGCGTATAGC GGCAATCTAC AATGGAAACG TAACGGAGTC 
AATATTCCCC AGGCTACCTC CTATGGCTAT GATGCCACCC AGTCAGGCAT CTATTCAGTT 
GTTCTTCAGG ATGGCTCCTG CTCGGCTGAG TCCGACCCTG TGGAAGTTAA AATCGGCGAA 
GTCACCACCG CTACGCTGTC CGGTAATGCC CTCATTACAT CCGGGCAGTC AGCCAAACTA 
CCCGTTTCCT TTTCCGGGCC AGCCCCCTGG TCGGTTACCC TTACTAACGG CCAGTCGGTT 
ACGGCGACTT ACCAGAACCC AACCCTGATT AGTGTTTCAC CTACCAGCAA CACCACCTAC 
CAACTCGCGT CGGTCATCAA TGCCTGTGGC ACCGGCACCA CCTCCGGTCA GGCCAGCGTT 
TCGGTCGGTA TAGGCTCGGC CGACGTCTCG CTCAACATGG CCGCCAGCAA CCGTTCGCCC 
AAGGTGGGCG ATGTAGTCAA CTATACACTT AGTGCCACCA ATGCCGGACC CGACAACGCC 
GAGGGCATCC AACTCAGCAG CTTGCTCCCC GCTGGACTTG CCTTTGTGGG CAGTGCCTCC 
CCCGGTGTGA GTGCCGCCAA CGGCGTCATC AGTGCCAATC TGGGAACCAT CCCCGCCAAC 
AGCCAAAGCG CTATCAGCTT CCTGGCAACG CCTACTTTGC CCGGCACCTT TGCTACCACC 
GCTCAGATTA CGTCCAGTCT AACCCCCGAC CCCGACAGCC AGCCCAACTC GGGCACCGGC 
GACGGGCAGG ATGATGCCGT TCGTGTCGAT TTACGTACTA CAAGTGAGGG GGGTCTGGTC 
AGCTCGCCTA ACCCCAACCA GACACCACTG CCCGTTGTAG CCCCCAACCA ACCCGCCACC 
GGCCCTAACA CCGCCGACTT AAGTCTGGCC ATGAGGGTCG ATAAACTTAC CCCAACCTCG 
TCGAACCTCA TCAGCACCAG CCTGACGGTC AGCAACGGTG GTGGGTCATC GGCTTCGTCG 
ATTGTGGTAC AGGTGGTGTT GCCCAACGGG GTGGCTCTGC CAGCCAGTCA ATCGGGTTGG 
GTGCAGGTAG ATGGGCAGAC TTTTAAGGGG TATATCAATC AACTGGCTTC GGGTCAGTCG 
GCTACGCTCG TGCTCAACTG GCAAGCCACG GGTAGCGGCA CGCTGAAGGC CCAGATTCTG 
GACATGAATG AAGCAGACCC CGATTCAACA CCAGGCAATG GGTTTTCTAA AGGGGAGGAT 
GATGAAGCGG CCATTAGTCT ACGCCTGAGG TAA 

 

Protein sequence

MSFLSCCRLT AGLVLLLQPL LVFPQNQPRS TPQDTIRLLA EEEQRRLMDP ATGTVPYERL 
DAARQQLNNR AVTANGGPVA QSGIPNITWQ ERGPSNLGGR TRALLFDPND PTRKKVWAGS 
MSGGLWYTND ITDTNAGWTP VSDTWENMVV TALAADPSNP QVMYAGTGDM FNYVTGGGIW 
KTTNGGTTWT RLSNTIPGGN PPALSYSFGY IQRIVINSSG QVFAATRIGV VRSADGGTTW 
QYALAPNQGI GLTGSTGNYN NDLATDLELG TDGILYAGFN PNRLFRSTNT AGTSWTEITP 
AGASGGERTE LALAPSTSGT NQVIYAVLRA YNGSSYYQDI KWFKKSSNAG VTWTDVQIPV 
FSWGDHFTSS NGYYSMNLVV HPTDANTLYA GGYNWFRSVD GGNSWSVPLT NTYTRYQALL 
FQPGSTLSAA FCSDIGISWS SNWNDVSQTQ PTILDKNNGY RVNETNSVAM KSSPGSAYLL 
GTSRSGAFKL TANGLSAGSI FYTYSSDMGP AFIDEETPGS QLFTTSGGSV LSYDGSNYQF 
ITGLTSVGGV ADYDSPLNTL YIADYNYTTS QYFLRKVTGI GSSITTALVP LTGMTNSLSY 
LKLSKDRTAL FAGSYPNKLY KITNLDQASP TVMAIDNGAF PQYTTVACID IGATDNELLV 
TLSNFGVQSV WYTNDGGQSW VGKDQSNYGL PDVPVRAALF NPQNRKQVLL GTDAGIWSTT 
DITATNPGWA FSSTGMGTFR VNQLKYRSSD GRVAAAIYGR GIWTTDAFAT PYTAPTIAIT 
SISNSTLCAG NTFSVAFSTA GPAFNSGNTF EVWLSDAMGN FTNAQKIGSG TSSPITATLP 
SGYNAVPYGT SYQVKIMSTN PDIESSPSGI LAIGNLRSAE TLDRLAGLST YFSSYGIICP 
GSRATLKTYA YSTNYSRIEP TSYQWLVGSS PISGATSATI SVQQAGTYSA VVKQAGCTVT 
SYSYILAVST NPYNDLLSDS YWEPQCDDHP LKLTSIYPGE TAQFQWSRDG VDIAGATSYT 
YNASQTGSYS YRFTDGSCAV TSSKEYVQFG RALSAPIYLS WNSDSLLCSS ATNYNAAIYT 
NIPPANDYTV QWYRDGTIIS GATSRSYYPY QPGVYSMLLK QGSCQTRSNA IVISQSDQIK 
ASIIYSYPSK AACPGETRYL YAFPSNDGSF QWQKDGVDIA GATSSSYPAS VSGKYTVRIT 
KGSCSATSDP VSLTFSTTIQ PVITIAESNM GESCTGANPY VSDSYNQSGY QYQWYRNGTL 
LNGTTNSGFY TTQSGVYSVR VTNGSCTGLS KDVYLSIGNG SVAKPKITIT PMTRQLCLNN 
SLFLFVRAYS GNLQWKRNGV NIPQATSYGY DATQSGIYSV VLQDGSCSAE SDPVEVKIGE 
VTTATLSGNA LITSGQSAKL PVSFSGPAPW SVTLTNGQSV TATYQNPTLI SVSPTSNTTY 
QLASVINACG TGTTSGQASV SVGIGSADVS LNMAASNRSP KVGDVVNYTL SATNAGPDNA 
EGIQLSSLLP AGLAFVGSAS PGVSAANGVI SANLGTIPAN SQSAISFLAT PTLPGTFATT 
AQITSSLTPD PDSQPNSGTG DGQDDAVRVD LRTTSEGGLV SSPNPNQTPL PVVAPNQPAT 
GPNTADLSLA MRVDKLTPTS SNLISTSLTV SNGGGSSASS IVVQVVLPNG VALPASQSGW 
VQVDGQTFKG YINQLASGQS ATLVLNWQAT GSGTLKAQIL DMNEADPDST PGNGFSKGED 
DEAAISLRLR