Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4089 |
Symbol | |
ID | 8727848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 4922326 |
End bp | 4924605 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | |
Product | capsular exopolysaccharide family |
Protein accession | YP_003388875 |
Protein GI | 284038945 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.286783 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAAG GAGAAGTAAG TTACGTATCA TCCGGAGAAA GCAGCTTCAG GCGATTCCTT TACAAATACC GGCGTTTCTG GTATCTGTTT GTAATCAGCA TTGGCGCTAG CCTGGTACTG GCTGTCCTTT ATTTAAAATC GGCTACCCCG CAATACAATG TCAGTATAAG CCTGTTAATC AAAGATATAG AGAAAGGGCC TGACATTCGG CCGGGTAATC CGATTTTTAA AGAGTTGGAT ATCTTGAACT CGACAACCAG TATTGAGGAT GAGATCGAAG CGTTAAGATC GGTGACCCTG ATGCACCGGG TTTTAACGGA ACTTGGCTTG CAGACCAGTT ATTACGTAGC CGATTCGTTC AAGAAAAGGG AGATTTTTGG CGCCGATCTG CCTATCCGTC TATCCGTTAA AACACTCTCT CAATCAGCTT ATACAAAGCC GATTGCCATA GTCATTAAAA ACACGCAGGA GTTTCAGCTA CAGGACGGCC CCCCCCCTGC CAATACTTAC CGGTTCGGTC AGTTGATCCA ACGTCCTTAT GGCACGTTTA CGGTTCAGGC TAATCCGGAA GCCATGCGGT GGCAGCCCAA AAAAATATTT ATCTTCTTCA ATAACCTGGA GGATATGGCT GAAAGCTACA GTAAAGCGAC AGCCATTATT CAGCTTAATA AAAAAGCAAA TGTTTTGAGT GTATACATGC AGAGTGCCGT TCCGGAGAAA GGAAAGGTTA TTCTGAACAA GCTCATTGAG GTATACAATA AAGAGAACAA GGAAGATCGT AATATTCTGG CTCTCAATAC GATAAAATTC ATTGAGGAAC GATTAAGAGA CTTAACCGCC GAATTATCGG ATATAGAGAA GGCGACCGAG GAGTTCAAAC GCCGAAACCA GGTAACCGAT GTTCGCTCCG AAGCAAATGG GTATCTCGAA GAATCCAGAA TTTATAATAA TCAGCTATCG GCCAATAAAA TACAACTCGA TATTGCCGAA TCGCTGGAAC GATACCTGGC ACGGCAAAAG CAAAAATATG AGTTGGTACC CAGTAACCTG ACAATCAACG ACCCAACACT ACAGGACTTT ATTGGTAAAT TTAACGATCT GCTCCTCCAG CGGGAACGTA TGCTGCGTAC CAGCGAAACA ACAAACCCAC TGGTCGTACA CATCGATGAG CAGCTGGCCA GCTTCAGACA GTCCATTCTT GAAAACTTAA AGACCGTAAA ACGGGGCCTG CTCATTACGC AGGGCGACCT GACAGCCAAA ATCAGTAACT TACAGCAGCA CATCACTCAG GTACCCGATA TTGAGCGCCA GCTCAACGCC ATAAACCGGC AGGAAGGCGT TAAGCGAAAT CTGTATTCGT TTCTGCTGCA AAAACGGGAA GAATCGTCGC TGTCGCTGGC AGCTACCCTT TCAAATACCC GCGTCATTGA TCCAGCAACG GCCTCTAAAA CACCCGTTTC ACCCAAAAAA CCCGTTATTT TTGCCCTGGC ATTTGTACTG GGGCTGATTT TACCCCTTGC TTTTATTACT GTTCCTGATT TGCTGAGCAA CAAGGTTCGC CAGCGCAGCG ATGTATCGAC CGCCGTTGCA GTGCCTATTC TGGGCGAGGT AACGCACTAC AGAAAGAAAG GGATTTTCGT TATATCGCAG GAAACCAGGA AGCCAATAAT CGAGCAGCTT CGCCTGATAC GAAGCAACCT ACATTTTTCA ACTGCCAACC AGCCGCACCA GGTTATTCTG GTAACGTCCA GCGTAGCTAA AGAAGGAAAA ACCTTTTTTA GTATCAATCT GGCTCTAAGC CTCTGCTTTC TGAATAAAAA AGTAGCCCTG CTCGATTTAA ACTTCCGGAA CCCACGCCTT CTGACCGGTC TGCGGGTGGA GCATGAGGTT GGTCTAACGG ATTACCTGAA CGGTAGCACT CCCTCCCTGA ACAGCCTGTT GACACCCTTT CCGGGTACAC CCAATCTGTC GGTTATCGGT ACGGGACCTT TGCCCGCCAA TGCGCCTGAG TTTTTGCTGA ATGCAGGTAT AGGCACATTG ATCAGCGAGC TGCGGGAACG CTTCGACTAT GTTATTATCG ACTCGGCACC CGTGGGCGAG GTGGCCGATA CCTTTGCGCT GGCCGATCAT ATCGACACCA CCATTTTTGT TGTGCGTTTC AACTACACCC CTATAGAACG GCTTGAAAGT ATCCGGGAAG CCCATCTGGA AAACAAATTG AAACGTCCGC TCATCGTGCT CAACGACGCC CGGAAGGAGA ATAGTTACCG AGTAAAATAG
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Protein sequence | MTEGEVSYVS SGESSFRRFL YKYRRFWYLF VISIGASLVL AVLYLKSATP QYNVSISLLI KDIEKGPDIR PGNPIFKELD ILNSTTSIED EIEALRSVTL MHRVLTELGL QTSYYVADSF KKREIFGADL PIRLSVKTLS QSAYTKPIAI VIKNTQEFQL QDGPPPANTY RFGQLIQRPY GTFTVQANPE AMRWQPKKIF IFFNNLEDMA ESYSKATAII QLNKKANVLS VYMQSAVPEK GKVILNKLIE VYNKENKEDR NILALNTIKF IEERLRDLTA ELSDIEKATE EFKRRNQVTD VRSEANGYLE ESRIYNNQLS ANKIQLDIAE SLERYLARQK QKYELVPSNL TINDPTLQDF IGKFNDLLLQ RERMLRTSET TNPLVVHIDE QLASFRQSIL ENLKTVKRGL LITQGDLTAK ISNLQQHITQ VPDIERQLNA INRQEGVKRN LYSFLLQKRE ESSLSLAATL SNTRVIDPAT ASKTPVSPKK PVIFALAFVL GLILPLAFIT VPDLLSNKVR QRSDVSTAVA VPILGEVTHY RKKGIFVISQ ETRKPIIEQL RLIRSNLHFS TANQPHQVIL VTSSVAKEGK TFFSINLALS LCFLNKKVAL LDLNFRNPRL LTGLRVEHEV GLTDYLNGST PSLNSLLTPF PGTPNLSVIG TGPLPANAPE FLLNAGIGTL ISELRERFDY VIIDSAPVGE VADTFALADH IDTTIFVVRF NYTPIERLES IREAHLENKL KRPLIVLNDA RKENSYRVK
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