| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3995 |
|---|
| Symbol | |
|---|
| ID | 8727753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 4806501 |
|---|
| End bp | 4807505 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | ABC transporter related protein |
|---|
| Protein accession | YP_003388784 |
|---|
| Protein GI | 284038854 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.358421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000000106832 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCCA TCACCTATCC CCAGGCCCAG CCTTCACCCC TACAGCGGCT ATTTCGGCTA
CTGGGCACGG AGAAAAAAGA TATTGGCTAC ATCTACCTGT ATGCCCTTGT GACCGGTTTG
ATCAGTCTGT CGCTCCCACT TGGTATTCAG GCTGTTTTTA ACCTGGTTTC GGGTGGCGTT
GTCTTTAGTT CGGTGTACGT CCTGATTGGA CTTGTGGTAT TGGGGGTCCT CATTACGGGC
TTACTACTGG TTGGTCAGAT GACGCTGGTT GAGGTGCTTC AGCAGCGTAT TTTTGCCAAA
GCAGCCTTTG AATTTACCTA CCGGTTACCA CGTATTGAGC CCAAAGCCCT GTCGGCTTAT
TACGCCCCTG AACTGATGAA CCGCTTTTTC GACGTGCTCA CCATTCAGAA AGGGCTTCCT
AAATTACTCA TTGACCTAAC GGCCGCTGCG GTACAGATTC TGTTTGGTAT TATTCTGCTT
TCGTTTTACC ACCCCGTCTT TCTGGCTTTC GGTTTATTTA CGCTGGTCAT TATTATTGGT
ATCAGCTGGC TTTATGGCCC TCCCGGCTTA CGCACCAGTC TCAACGAGTC GAAGTATAAA
TACAAAGTGG TGGCCTGGCT CGAAGATCTG GCCCGTGACC TTCCTTTAAT CCGCCATCGG
GAAGATCCCA TGGAACCCAT CGACCGGATG GACGACCTGG TAGCCAACTA CGTGGCCTAT
CGGTCGGCGC ACTTCAAAGT ATTAAAACGC TTCTTCTACA GTGCCGTCGC CTTCAAGACT
ATCGTAACGG GAGGCCTGCT CATTCTGGGA ACTACGCTGG TCGTGAGCCG TGAAATGTCC
CTGGGTCAGT TTGTAGCTGC CGAACTCGTT ATTGTCTTGA TTACCAGCTC CGTCGAGAAA
CTAATTTCGG GTATCGACAC CGTATTTGAT TTACTTACTG CCGTTGAAAA AATTGCAACC
GTTACCGATT TACCTTTAGA AACAGACACA GAAACCCATG CTTAA
|
|---|
| Protein sequence | MASITYPQAQ PSPLQRLFRL LGTEKKDIGY IYLYALVTGL ISLSLPLGIQ AVFNLVSGGV
VFSSVYVLIG LVVLGVLITG LLLVGQMTLV EVLQQRIFAK AAFEFTYRLP RIEPKALSAY
YAPELMNRFF DVLTIQKGLP KLLIDLTAAA VQILFGIILL SFYHPVFLAF GLFTLVIIIG
ISWLYGPPGL RTSLNESKYK YKVVAWLEDL ARDLPLIRHR EDPMEPIDRM DDLVANYVAY
RSAHFKVLKR FFYSAVAFKT IVTGGLLILG TTLVVSREMS LGQFVAAELV IVLITSSVEK
LISGIDTVFD LLTAVEKIAT VTDLPLETDT ETHA
|
|---|
| |