| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3886 |
|---|
| Symbol | |
|---|
| ID | 8727644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 4661090 |
|---|
| End bp | 4662685 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | nickel-dependent hydrogenase large subunit |
|---|
| Protein accession | YP_003388675 |
|---|
| Protein GI | 284038745 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.713091 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTC AGAAAGAACT AAATATTTCG CCGGTAGGGC GGGTCGAGGG CGACCTCGAT
GTGAAGGTAT ATATGGAAGA CGGTGTCGTG ACGCGGGCGC ATACACAGGC GGCCATGTTC
CGGGGCTTCG AGAAAATTAT GGAGGGCAAA GACCCGCAGG CAGGGTTGAT TGTAACCCCT
CGTATCTGCG GAATCTGCGG AGGGTCGCAC CTTTACTGCG CTTCGTCGGC GCTGGATACG
GCCTGGAAAA CGACCCTGCC GCCCAATGCG CTGTTGCTGC GCGCCATTGG GCAGGCTACC
GAAACCATTC AGAGTATCCC CCGCTGGTTC TACGCCATTT TCGCTACGGA CATGGCGAAC
AAAAAATTCG CCAACAAACC ACTCTACGAT GAAGTTGTGA AGCGGTTTGC GGCTTATGTA
GGAACGTCAT TTCAGCGGGG CGTTACCGCC AGCGGACGTC CGGTAGAGGT GTACGCGCTT
TTCGGTGGGC AGTGGCCGCA TTCGAGTTAC ATGGTGCCCG GTGGCGTCAT GTGTGCGCCT
ACGCTCAAAG ACATCACCCG CGCCCATGCC ATCATGAACC AGTTCCGGAA AGACTGGCTC
GAAACACTAT GGCTGGGCTG TTCCATCGAG CGATACATGC AGATCAAAAC CTGGGACGAC
CTAATGGCCT GGGTGGAGGA AAACGACTCG CAACGGAATT CAGACCTGGG CCTGTTTATC
CGGGCCAGTC TGGAGTTTGG CCTGCATAAG TTCGGGCAGG GTGTGGGCAA GTTCGTTGCG
TACGGAACGT ATCTGCACAA AGACCATTAC CAGAAACCAA CCGTAGAAGG CCGCAATGCC
GCACTGATTA GCCGAAGTGG CTTCTTCGAT GGCAGCAAGT ATCACGTTTT CGATCACCTG
AGCATTAAAG AACACGTGGG CCATGCCTGG TATAAGGATG TGCCGGCGGC TCACCCCTGG
GACGAGCCTA TGCCAACGCC CCTGCAGTCG CACACGCTGC ACGATTCGAA TTTCAATGAG
AAATATAGCT GGTCAAAAGC ACCCCGTTAC ATGGATATGG CGGCCGAAGC CGGACCGCTG
GCCCGCGTGA TCATGAACGC CAATCCGGAT AATCTGCTGC CGCATCAGGT CTACGATCCG
CTGTTTGGCG ATGTGCTGGA CAAAATGGGC GCTAACGTAT TTACGCGAAC GTTAGCCCGT
GTTCACGAAG CGGCCCGCCT GTACACCCAA ATTGATGAGT GGCTCCGGCA GATCGACCTC
AACAGCGAGT TCTATATCAA ACCGGAGGAG CGCGACGGCA AAGGGTTCGG CGCTACCGAA
GCGGCCCGTG GGGCGCTTGC CCACTGGATT GAAATTGAGA ACGGCGTTAT TAAAAACTAC
CAGGTCATGG CTCCTACAAC CTGGAACGTA GGACCCAACG ACGATCGGGG CAACCCCGGC
CCAATCGAAG CGGCTCTCGA AGGCACCGAA ATCGAGGACC CGCACGACCC CGTCGAAGTG
GGTATGGTAG CCCGTTCATT CGATTCCTGT CTGGTTTGTA CCGTCCACGC CCACGACGGC
AAATCGGGTG AGCAACTGGC CAAATTTAAA TTATGA
|
|---|
| Protein sequence | MATQKELNIS PVGRVEGDLD VKVYMEDGVV TRAHTQAAMF RGFEKIMEGK DPQAGLIVTP
RICGICGGSH LYCASSALDT AWKTTLPPNA LLLRAIGQAT ETIQSIPRWF YAIFATDMAN
KKFANKPLYD EVVKRFAAYV GTSFQRGVTA SGRPVEVYAL FGGQWPHSSY MVPGGVMCAP
TLKDITRAHA IMNQFRKDWL ETLWLGCSIE RYMQIKTWDD LMAWVEENDS QRNSDLGLFI
RASLEFGLHK FGQGVGKFVA YGTYLHKDHY QKPTVEGRNA ALISRSGFFD GSKYHVFDHL
SIKEHVGHAW YKDVPAAHPW DEPMPTPLQS HTLHDSNFNE KYSWSKAPRY MDMAAEAGPL
ARVIMNANPD NLLPHQVYDP LFGDVLDKMG ANVFTRTLAR VHEAARLYTQ IDEWLRQIDL
NSEFYIKPEE RDGKGFGATE AARGALAHWI EIENGVIKNY QVMAPTTWNV GPNDDRGNPG
PIEAALEGTE IEDPHDPVEV GMVARSFDSC LVCTVHAHDG KSGEQLAKFK L
|
|---|
| |