| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3858 |
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| Symbol | |
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| ID | 8727616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | + |
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| Start bp | 4628635 |
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| End bp | 4630842 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_003388647 |
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| Protein GI | 284038717 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.567499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCTC AACTTATTAA TCGCCTTCTA AGACAAAATA TTTTCTGGCT GATATTGATG
CCGGTCATTG CTGCCTGTAC GGCCTACTAC TTCACGCGTA GTCTGCCTCG TGTTTACGAA
TCAACCGCTA CCCTTTATAC GGGCCTTACC TCCGGCTATT CGATACTATC GAACGAATCG
AACGCCCGCG TTGACCACGA AGCAGTAGAC AATGCCTTCG AGAACCTGCT CTCGACCATC
TCCTCCCGCG AAACAATGGC CCAGGTATCT ATCCGGCTCC TGAGCCGTCA CCTGATGCTG
GAATCGCCCG ATTCGATGGT TATGGACAAC CACAATTTTA AAGAGCTGCG CAAAGCCGTT
CCGGAAGAGC TGCGTGCTAA CCTGGTTGCC AGCCGAAACG AGCAACTTAT TTATCGTCGT
ATCGACAGTA TGGCGCATAC GATAAGCGAC AACCCGATTA AAAAGCTGCT GAGTAACCCC
ACGTCAGATT ATTCAACGGC CAGGATTACC AAACAACTGA AAGCCATCCG GAAGAAAGAC
AGTGATATGC TCGAACTGTC TTTTCAGGCC GACGATGCCG CTTTGACGTA TGCGACACTA
ACGGAACTGA TCGACGTGTT CAGCAACCGG TATGCAGGCT TCAAAACATC CGAAACAAGC
CCGGTTGTCA GCTACTACAA TAACCGTAAT CAGGAAGCCA TTCAAAAACT ACAACAGGCT
GAGCAACGAC TTAAGGCATT TGAGGAAACC AACCAGATTA TCAATTACGA CGAAGAAAGC
CGCAGTATTG CCCTCAACAA AGACGCGCTC CAGGGTCAGT ACAACGAAGA GTTGATGAAA
TTAAAGGCGG CCAAAGCCTC GATGGATGCA CTCGGCAAAC GCCTTGACGA CCGGATGAAC
GCGTTATCCG TAAACGACGA GCTCCTAACC AAACGGCAGG AACTCACCAC AGCAACCAGC
CAGTTATCGC AGGCCCGAAT GGCTGGCCGA CCCAAAGAAA CGATTGATCA GCTTTTGGGA
AAAGTTAACC GGCTTACCGA CGATCTGAGA GTTACGGCTC AAAAATATTA CAAAGCCGGC
AACTCCACCG AGTCGATCCC CCAAATGCAC CTGCTGGACG AATGGCTCAA CCGGGTCATC
CTGTACGAAG AATCCAAAGC GCGGCTGGCC ACCTACGAAA AACGCCTGGT CGACTTCAAA
GATATGGCCG CTAAGTTTAC GCCCCTGGGA TCGACACTTA CCCAAATTAA GCGTGATGTT
AGTGTAGCCG AAAAAGATTA TCTGGCTACC ATGGTAGCTC TGAGCCAGGC TAAAACCCGG
CAGAAAAATG CGGAAATGAC CGGCCCGCTC AAGTTGCTCG ACGCGCCCCA GTTTCCGCTG
CATCCGCTAC CCTCCAAGCG TTGGATGATT CTCGGTGCTG CCTTTGGCGT TGGGCTGGTG
CTGGCGCTGC TGCTGCTCCT GATTCGTTAC CTCATAGACG GACGTATTTA TGACGCAACC
CGTTTTGAAG AGGTAGCCAA ACTACCGGTT GCCGCATCAT TTCCCGCCGT TCCGGCACGG
AGCCGTAATA AGAAAACGCG CATCATGCTG CAATACATGC TGGACAATCT GCGCAGTAGA
GCCGAAGTCG ACATGAGTTC GATGCCCGAT TACCGGCCTT ATGTACTGAT CTCCGTCTGG
AGTACGCGGC CTAAACAGGG TAAAACCTGG CTGGCCAGCC AACTGGCCGA ACAGTATGCA
GTTGCCGGAA AACGCGTGGC CCTGCTTTCG CCCTATACAC TGAGCGAGGG GAACCAACTG
CCCGAAGAGG TTACCACCAT CGCCTACGAA GTACGAAGTG ATTTTGCCTA CGCCAAAACC
GTCGATCAGG TTGTTGGCAA CCTGATGCCG TTCGACTCGC AGCAGTACGA TATCATTTTG
CTGGAACTAC CCGACCTGAG CATCACACCC ATTGCAACGC ACCTGGTAGC CCAGAGTAAT
CTGCTGCTGA TGGTCGTAAA TGCCCGAATC ACCTGGAACA GTACAGACCA GAATCTTTAT
CAGCTGTACC GGAAAGCCAC CAAGGCCCCC ATTCTGTCGG TTCTGAACTA TGTTCATCCC
AGCCTGATCA GAGTAAGTCC AATTGCCGAT GCCCCCGTAG TCGTTGCCAC GGGTGTACAT
CAACCCAGTG CATTACCAGC CCATCTACCC ACCCAAGAAA CTGTTTAA
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| Protein sequence | MNSQLINRLL RQNIFWLILM PVIAACTAYY FTRSLPRVYE STATLYTGLT SGYSILSNES
NARVDHEAVD NAFENLLSTI SSRETMAQVS IRLLSRHLML ESPDSMVMDN HNFKELRKAV
PEELRANLVA SRNEQLIYRR IDSMAHTISD NPIKKLLSNP TSDYSTARIT KQLKAIRKKD
SDMLELSFQA DDAALTYATL TELIDVFSNR YAGFKTSETS PVVSYYNNRN QEAIQKLQQA
EQRLKAFEET NQIINYDEES RSIALNKDAL QGQYNEELMK LKAAKASMDA LGKRLDDRMN
ALSVNDELLT KRQELTTATS QLSQARMAGR PKETIDQLLG KVNRLTDDLR VTAQKYYKAG
NSTESIPQMH LLDEWLNRVI LYEESKARLA TYEKRLVDFK DMAAKFTPLG STLTQIKRDV
SVAEKDYLAT MVALSQAKTR QKNAEMTGPL KLLDAPQFPL HPLPSKRWMI LGAAFGVGLV
LALLLLLIRY LIDGRIYDAT RFEEVAKLPV AASFPAVPAR SRNKKTRIML QYMLDNLRSR
AEVDMSSMPD YRPYVLISVW STRPKQGKTW LASQLAEQYA VAGKRVALLS PYTLSEGNQL
PEEVTTIAYE VRSDFAYAKT VDQVVGNLMP FDSQQYDIIL LELPDLSITP IATHLVAQSN
LLLMVVNARI TWNSTDQNLY QLYRKATKAP ILSVLNYVHP SLIRVSPIAD APVVVATGVH
QPSALPAHLP TQETV
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