Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_3400 |
Symbol | |
ID | 8727153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 4112434 |
End bp | 4115607 |
Gene Length | 3174 bp |
Protein Length | 1057 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | TonB-dependent receptor plug |
Protein accession | YP_003388207 |
Protein GI | 284038277 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.101583 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTTT TATTTTGCCT GTTGTCCGGC TTTTCAGCCG TAGCCCAGAC GGTTACTGGA CGCGTAACAT CGGGCGATGA TAATCAGCCG CTGCCGGGTG TATCCATCGT TGTGAAAGGC ACTAATGCCG GTACTACTTC CCGCGCCGAT GGCACCTACT CTATCAATGT ACAGCCATCC AGCACCCTGA CATTCTCGTT CATTGGCTAC GCCACGCAGG AAATTGCCGT AGCCAATGGC AACGGCCAAC CGCGCACCAA ACTGGACGTG ACGATGCTGG CCGGCGACCG GACGCTGAAC GAAGTGGTGG TAACGGCTCT CGGTATTAAG AAAGACGTTC GCAACATCGG CGTCTCGATT CAGTCAGTAG ATGGTTCACA ACTGCTCAAA GCCCGGGAAC CAAACGCGGT TAATGGTCTG GTTGGTAAAG TGGCCGGTCT GACCATCGGT GCCTCCGCCG AACTGCTGCG TCGGCCAAAC ATCGTTCTGC GTGGTAATAC CGACGTGCTG TTCGTAGTAG ATGGCGTGCC CATCAACTCC GATACCTGGA ATATCAACCC CGACGATATT GATACATACT CTGTTCTGAA AGGGGCATCG GCGTCGGCAC TCTATGGGTT CCGGGGTAAA AACGGAGCCA TCCTGATCAC GACCAAGCGC GGCACGAAAG ATAAGCGCGG CTTTGAGGTG GCTGTAAACA CGAGCCAGAT GGTCGACAAT GGCTTCCTGG CCATTCCTAA AGTACAGGAC GAATATGGCC CAGGCGACCA CGGCGTTTAT GAGTTCGTGG ACGGTAAAGG GGGTGGTAAA AACGATGGTG ACTACGACAT CTGGGGCCCC CGTTTCGAAG GTCAGTTGAT TCCCCAATAC GACAGCCCTA TCGACCCTGT AACAGGCAAA CGGATCGGTA CGCCCTGGGT AGCTCGCGGT AAAGATAACC TCAAGCGGTT TCTGCAGGCA GGTATACTCT CGACCAACAA CATCTCGGTG TCGTCGTCGG GTGAGAAATA CGACCTGCGT TTCTCGGTAT CGCATAACTA CCAGCGCGGT CTGGTGCCCA ATACCAAGCT GAATAGTACG ACCTTCAAAG TATCGACAGG TTATAATTTC TCGAATCGCC TTCGGTTTGA AGGCGATGTG CAGGTAAACC GTCAGTTTAC GCCCAATATA CCTGACGTAA ACTACGGCCC TAACTCCATG ATCTATAACA TCGTGATCTG GGGTGGTGCC GACTGGGATG TTGATCAGTT GAAAAACTAC TGGCAGCCAG GTAAAGAAGG TACGCAGCAA ATCTATGCTG AATATCAACG GTATAATAAC CCCTGGTTTA CCGCTAAAGA GTGGCTGCGC GGGCATTATA AAACGGATAT CGTTGGTCAG ACCTCCCTCA AGTACAACAT TACCGATGGC CTTGACCTAA CCCTGCGGAC ACAGGTATCG ACCTGGAACC TGCTGCGTAA CGAGAAGTTT CCGTACTCAG CCACCAGCTA TGGCCGCGAA GAAACGAAAG GCGATTACCG CGAAGACCGC CGGAATCTGC TGGATAACAA CACCGACTTA CTGCTCAAGT ACGCAAAGCG TGTTAGTCCG TTGCTGAACG TAAACGCCAT TGCCGGGGGT AACCTGCGGG TGTACAACTA CAACTCGAAC TACACATCGA CCAACTACCT GAACGTGCCT GGCGTTTACA ACTTCGCCAA CTCGCTCAAC CCGGTCATTG CGTCGAACTT CCAGTCTGAT ATGCGGGTAC TTTCGGCCTA TTACTCGGCT GACTTTACGC TGAAGGATTT CGTAACCCTG TCCACAACGG GCCGGATGGA TAAACTGTCT ACCCTGCCAA AAGGAAACAA CACGTTCTTC TATCCGTCAG TAGCGTTGAG CACAGTATTG TCGGATTACC TCCGGTTACC ACAGGCTATT TCGTTCCTGA AATTCCGGGC GTCGTATGCC AATGTAAAAG ACGGTTTGAC TCAATCGACC ATCGGTGTAC CAAACTGGTC GCTGGGCTAT GGTGAGCAGT ATCAGTCTTC TTACGATGGG CCAACGTATC AGAACTCAGC CGTGTATAGC ACACCATACA CGGTTGGTAA TACGCCAACG GCTTACTTTA CAAACGCCCT GAACAACCCA AACATCAAAC CGAACAGTAC CTCGCAGACC GAGGTGGGTT TAGATGTTCG TTTCCTGAAC AACCGGATTG CGTTTGATGC TGCTTACTTC ATCAGTGACG ATGGTCCGCG TATTTTCAAC CTGCCTATTT CTGAAACAAC CGGCTATTCA TCAGCTCTGG TAAACGGTAT CAAAACCCAG AAGAAAGGGA TTGAATTGTC GCTGACGGGT AAAGTTCTGT CAAATCCAGG TGGCCTGAAC TGGGATGTGC TGGCTAACTG GTCGACCTAC AAAGAAATCT ATAAAGACTT CTATCCGGGT GTAACGGCGC TGAACACCTT CTTCAAAGTG GGCGACCGGA CGGATAAATA CTATACCTCG ACCTACGTGC GTACGCCCGA CGGGCAGATT ATCAATGACG CCGGTGGTCG CCCAATTCGT ACCACAGTGG CACAGTATGT AGGAAACCTG CTCCCTGATT TTGTTTTTGG CTTGAACAAC CGGTTTAGCT ACAAGAATCT AACCTTTAGC TTCCAGTTCG ATGGTCGTGT AGGCGGTGTT ATCTCCGACT ATGTGCAGCA GAAGACCTGG GCCGGTGGCC GGATCATTAA TACCGTGCAG GGCGATATGG CCGCAGCGCG TCTGAACGAT ACGAAAGGAA TCAAGTCCTA TCTGGGCGAA GGCGTACAGG TAAGCAACGG AGCTGCCATC AACTATAATT CGGATGGGTA CGTGACCAAC TACGCTGAAC TTCAGTTCAA ACCAAACGAA ACCAAAGCGT ATTTGCAGGA TTACATTGCC CGGCGTTACG GCTTCGACGG TGGCAACATC ATCAGCCGCT CATACGTAAA ACTTCGTGAA GTAGTGGTTG GGTATTCGCT GCCGCAGGTG TTCACCAGCC GACTGGGTAT CAAGCAGGCA TCAGTTTCTT TAGTTGCCCG TAACTTGCTC TACTTTGCTG AGAAGAAGGA CATCGACATC GACCAGTTTA CGAGCGGTGG TCGTTCGGAT CTGCAAACGC CAACGACGCG TCGCTACGGT ATCAACCTGA ATCTGACATT CTAA
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Protein sequence | MAFLFCLLSG FSAVAQTVTG RVTSGDDNQP LPGVSIVVKG TNAGTTSRAD GTYSINVQPS STLTFSFIGY ATQEIAVANG NGQPRTKLDV TMLAGDRTLN EVVVTALGIK KDVRNIGVSI QSVDGSQLLK AREPNAVNGL VGKVAGLTIG ASAELLRRPN IVLRGNTDVL FVVDGVPINS DTWNINPDDI DTYSVLKGAS ASALYGFRGK NGAILITTKR GTKDKRGFEV AVNTSQMVDN GFLAIPKVQD EYGPGDHGVY EFVDGKGGGK NDGDYDIWGP RFEGQLIPQY DSPIDPVTGK RIGTPWVARG KDNLKRFLQA GILSTNNISV SSSGEKYDLR FSVSHNYQRG LVPNTKLNST TFKVSTGYNF SNRLRFEGDV QVNRQFTPNI PDVNYGPNSM IYNIVIWGGA DWDVDQLKNY WQPGKEGTQQ IYAEYQRYNN PWFTAKEWLR GHYKTDIVGQ TSLKYNITDG LDLTLRTQVS TWNLLRNEKF PYSATSYGRE ETKGDYREDR RNLLDNNTDL LLKYAKRVSP LLNVNAIAGG NLRVYNYNSN YTSTNYLNVP GVYNFANSLN PVIASNFQSD MRVLSAYYSA DFTLKDFVTL STTGRMDKLS TLPKGNNTFF YPSVALSTVL SDYLRLPQAI SFLKFRASYA NVKDGLTQST IGVPNWSLGY GEQYQSSYDG PTYQNSAVYS TPYTVGNTPT AYFTNALNNP NIKPNSTSQT EVGLDVRFLN NRIAFDAAYF ISDDGPRIFN LPISETTGYS SALVNGIKTQ KKGIELSLTG KVLSNPGGLN WDVLANWSTY KEIYKDFYPG VTALNTFFKV GDRTDKYYTS TYVRTPDGQI INDAGGRPIR TTVAQYVGNL LPDFVFGLNN RFSYKNLTFS FQFDGRVGGV ISDYVQQKTW AGGRIINTVQ GDMAAARLND TKGIKSYLGE GVQVSNGAAI NYNSDGYVTN YAELQFKPNE TKAYLQDYIA RRYGFDGGNI ISRSYVKLRE VVVGYSLPQV FTSRLGIKQA SVSLVARNLL YFAEKKDIDI DQFTSGGRSD LQTPTTRRYG INLNLTF
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