Gene Slin_2627 details

Gene Information

• Locus tag: Slin_2627
• ID: 8726372
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: -
• Start bp: 3175664
• End bp: 3179017
• Gene Length: 3354 bp
• Protein Length: 1117 aa
• Translation table: 11
• GC content: 55%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003387443
• Protein GI: 284037513

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.454001
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.67516
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTAATAC ATTCTACTTA CTCCCCTAAA TGCATTCGAT ATGTACTACA TATTGTCTGC 
TGGCTGGTTG CCTTTAGCGC CTGGGCGCAA ACGGCCCCGC TGTCCGGTAT CGTTCGGGAT 
GGCCGAACCA GCGAAACGCT GCCCGGTGTA AATATCACAA TCAAAGGAAC GAGCCGGGGC 
ACCGTAACCA ACCAGGACGG TCAGTTCTCG CTTGCCGTTC GCAAGGGCGA TGTACTGGTG 
GTCTCGCTCA TCAGCATGAG CACCCAGGAA ATCGTTGTCG ATAATCAGAC ATCGCTGGAC 
ATCCGGCTGG CCGAAAGCGC CAAAAGTCTC GACGAAGTTG TTGTGGTTGG CTACGGCCAG 
CAGAGCCGGA AAACACTCAC CGGGGCCGTA TCGACCATTG ACCAGACTGC TTTCAAATCG 
GTACCGCGAA CAAACGTGGG TACGGCCTTG CAGGGAACCG CGCCCGGTTT GCGTGTGCAG 
CAAACGACGG GGCAGCCGGG AGCAACGCCC ACTATCGTTT TCCGGGGCGG CACCGATTTC 
AACGGGTCCG GTTCGCCACT GGTGGTGATG GATGGGGTTA TCGTTCCTTC TCTCTTCGGT 
ATCAATATGG AGGATGTAGA GAGCATTGAT CTGCTGAAAG ATGCTGCCTC TGCGGCCATC 
TACGGCGCAC GGGCCTCGAA TGGGGTGATT CTGGTGACGA CGAAAAAGGG GAAGAAAGGC 
CGCACGTCCG TAACCTATAG CTACAAGCGG GCCAACAACT ACATCCGGCG CAACCCACTC 
GACTACATGA GTGCGGAAGA CTACATTCTC TGGAACCGGC GGGGGCTGGC CAGCCGGTAT 
GCTGCGGCAC AGGCTGACAA CAATACCGCT GAGATGAACA ACGCCCGCAA CCAACTAACG 
GGTGCCTGGG GGTGGGGCGT CAACTCGGGC TGGACAGCCC CCGACGGCAA GTACTCGACC 
CAACTGGTGT CGAATAATAA CCGAAACCTG CTCAGCGACC CGCAGTATCA TCTATTGATC 
GACAAAAACC CGTTCAATGC CAATCAGACG GACAGTCTGT TGTATCGTTC CATCTCGCAG 
CGCCGACTGG AAGATCTGAT TCTTCAACAG GGCACCCTGA ATGAGCATTA CCTGAATGTT 
TCGGGGGGTA ACGATCAGGG TAACTTTTCG CTGGGTGTGG GTAGCATCAG CGATGTGGGT 
ACGCTTATTG GCTCCTCGCT CAGCCGGATG AACATGAATT TCAACGGCGG GCTGAACGTG 
GGTAAAAATC TCGTTGTCAA CCTCAATATG TCGGGCTACA GCGCAAAAAC GACCCCTTCG 
TACTTGTCGG CCGATGGGGG AGGTGGCGTT GGTGGCGGTA TTGTTCAGCG TTTTACGGGC 
ATTGCACCTA CCGTTCGGCT GACGCATGAC CTCACCGGTG CCGAACTGCC CGGTGTGGAT 
GGCAGCACCC TGGGTAACCC GAATTATTTC CGGGATAAAT TTTTCAACCA GACCCTCGAA 
CAGCGCTATT CCGGTGGGCT GAATCTGGAG TACACGATTC TGCCGGGGTT GAAAGCGCTG 
GCGTCGGCAT CGGGATTTTA CCGGTATACC ACGAATGAGG GGTTTACCAA AGCTTACATA 
AACGGAACCG GTGGCGCGTT GATCAACACG CGCAATGCGT CGTTTACCAA CCAGCGGGCC 
AGTCAGTATA CCTATAACGC CTTTCTTCAA TACAACAAAG ATTTCGGTAA GCATACCGTG 
TCGGCACTGG CGGGCGGGGA ATTTTTCGAA TCACGGGTCT ATGATTATGG CGCAACGGCC 
AATCTGGCTG CTACCGATTT CATTCCCTGG TTATCGGCCT CAACAGCGGC TGTGGGGGTA 
CCAACCTCTT CGTTTTCAAG CTGGCAGCGG CTGGCCTCGG TCATTGGCCG GGTTAATTAC 
ACCTTCGCCA ATACCTATCT GCTGAATGTC AACCTTCGCT ACGATGGTAC CTCGAAGCTG 
ATCACGAATC AGTACGGATT TTTCCCCGGC GTTTCGCTGG GCTGGAACAT GCACTATGCA 
GATTTCTTCG CCAACTCGTT TCTTCGCCGG TACGTGTCGA CGCTGAAACC CCGGATCAGC 
TTCGGCGAAA ACGGCAGCAT CAACCCGCTC AACAGCGCGG GCCAGCCCCT TATTGGCGAC 
TATGCCACCA TTCCTCAATA TGGCAGTGTT GGTACGTATA ACGGTCAGCC GGGGTTTGCT 
GCTGGCAGTA TAACCAATAC CAACCTCAAA TGGGAGCGGG CCAATACGCT TAATTTCGGC 
CTTGATGTGG GGCTGCTCAA CAACCGCGTA ACGGTCATTG CCGATTACTT CATCCGCAAT 
GTGTACGATA AAATCACCTC GCTCACTATT CCAGGCTGGA CCGGCTATAA TTCCTACGTG 
ACCAACCTTG GCCAACTCCA GAACCGGGGT GTCGAACTGG AGGTAAGGGC GAATGTGCTG 
AAACCGTCGA GTGCCAACGG GGTATCCTGG ACCGTCAGCG CCAACCTGTT CCATGTTAAG 
AATTTTGCCA AAAAACTGCC CAATAATGGT CTGGATCGGA ATCGGCAGGG GGCTGTCCAG 
ATTTTCGATC CCGCCCAAAA CAAGCTGGTT TGGGTGGGCG GTTTGCAGGA AGGTAAACGG 
GTTGGCCTCG ACGAGATTTA TGCCCCCATC TACGACGGTA TCTACACCTC GCAGGCCCAG 
CTGGATGAGC GCGCCAACCT GCTGAATACC TACCTGCCCT ACACCAACAA GCGAATCAAA 
CTGCTGGGTG ATGCCCGCTG GCGGGATACC GACAAAAACG ATACGCTCGA CTACCGTGAT 
AACGTGTATG TGGGCCGAAC AACGCCAACG ATTCAGGGTG GTTTCTCGTC GAACCTGTCC 
TGGAAAGGCT TCAACCTGTA TGCTCAGTTC GATTATTCAC TGGGTTTTAT TATTGCCAAT 
CAGTCGTACC TGCGTGGCAT GTCGCAGGTG CAGGGATCCC AGAACGGGCC GGTCGACGTG 
ACCAAAACGT GGTCGCCGGA GAATCCGACC GGTACGCTGC CCCGCTATTA CTGGGCCAAC 
TACGGCCGGA ACTATTTTAC CGATGCCGGT GGCAGCACGA CGGCCCCCGC CAATTTCTGG 
CAGAAGGGCG ATTATCTGGC CATGCGTGAA GTGACGCTGA GCTACGATAT GCCCGCTTCA 
TTGCTAGAAC GGGTGGCCCG TAACCGGGTC AAGAGCCTTC GGGTATTTCT GACGGGCTCC 
AACCTGGTTT ATTTCACGGG CTATAATGGT ACGTTTCCCG AAGTGGGCGG AAACGATGTG 
GGCCGCTTCC CATTGCCCCG AACCGCAACA TTGGGTGCCA CCATCAGTCT CTAA 

 

Protein sequence

MLIHSTYSPK CIRYVLHIVC WLVAFSAWAQ TAPLSGIVRD GRTSETLPGV NITIKGTSRG 
TVTNQDGQFS LAVRKGDVLV VSLISMSTQE IVVDNQTSLD IRLAESAKSL DEVVVVGYGQ 
QSRKTLTGAV STIDQTAFKS VPRTNVGTAL QGTAPGLRVQ QTTGQPGATP TIVFRGGTDF 
NGSGSPLVVM DGVIVPSLFG INMEDVESID LLKDAASAAI YGARASNGVI LVTTKKGKKG 
RTSVTYSYKR ANNYIRRNPL DYMSAEDYIL WNRRGLASRY AAAQADNNTA EMNNARNQLT 
GAWGWGVNSG WTAPDGKYST QLVSNNNRNL LSDPQYHLLI DKNPFNANQT DSLLYRSISQ 
RRLEDLILQQ GTLNEHYLNV SGGNDQGNFS LGVGSISDVG TLIGSSLSRM NMNFNGGLNV 
GKNLVVNLNM SGYSAKTTPS YLSADGGGGV GGGIVQRFTG IAPTVRLTHD LTGAELPGVD 
GSTLGNPNYF RDKFFNQTLE QRYSGGLNLE YTILPGLKAL ASASGFYRYT TNEGFTKAYI 
NGTGGALINT RNASFTNQRA SQYTYNAFLQ YNKDFGKHTV SALAGGEFFE SRVYDYGATA 
NLAATDFIPW LSASTAAVGV PTSSFSSWQR LASVIGRVNY TFANTYLLNV NLRYDGTSKL 
ITNQYGFFPG VSLGWNMHYA DFFANSFLRR YVSTLKPRIS FGENGSINPL NSAGQPLIGD 
YATIPQYGSV GTYNGQPGFA AGSITNTNLK WERANTLNFG LDVGLLNNRV TVIADYFIRN 
VYDKITSLTI PGWTGYNSYV TNLGQLQNRG VELEVRANVL KPSSANGVSW TVSANLFHVK 
NFAKKLPNNG LDRNRQGAVQ IFDPAQNKLV WVGGLQEGKR VGLDEIYAPI YDGIYTSQAQ 
LDERANLLNT YLPYTNKRIK LLGDARWRDT DKNDTLDYRD NVYVGRTTPT IQGGFSSNLS 
WKGFNLYAQF DYSLGFIIAN QSYLRGMSQV QGSQNGPVDV TKTWSPENPT GTLPRYYWAN 
YGRNYFTDAG GSTTAPANFW QKGDYLAMRE VTLSYDMPAS LLERVARNRV KSLRVFLTGS 
NLVYFTGYNG TFPEVGGNDV GRFPLPRTAT LGATISL