Gene Slin_2020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2020 
Symbol 
ID8725758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp2439888 
End bp2440988 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content51% 
IMG OID 
ProductMandelate racemase/muconate lactonizing protein 
Protein accessionYP_003386864 
Protein GI284036934 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTAA AAGCCGACTA CCTGAAATAC ACGTTGCATT TTCGCTTCGA AGCGGGTACG 
TCACGCGGCA CCCTAACCGA AAAAACGTCT TATATAATCC GGCTTTCTGA CGATGAAAAT
CCGACCGTTA TCGGGTACGG CGAATGCGGT CCGTTAAAAG GCCTCAGCTA CGACGACCGC
CCCGATTTTG AAGAGTGTCT CCGTCAGTAT TGCGATGAGT TTACGGCCAT GGACCTTCAG
CTGTTCAGCT GGAATGTCCC GATCATTCTC AACCAGGTCA TCAGCCCCCA GTTCCCGAGT
ATTTTATTTG GTTTCGAAAC CGCAATGCTC GACTTTCTAA TGGGGGGAAA GCGGATCATT
CGCCCGTCGG ACTTTATCAG TGGTCAGCGC AGCCTCCCCA TCAACGGACT CATCTGGATG
GGGAGCCAGT CGTTTATGCG CCAGCAGATC GAAGAAAAAC TACTGGCGGG CTATACCACC
CTGAAATTAA AGATCGGAGC TATCGACTTT AATCAGGAAT GCGACCTGCT CGCGATGATT
CGGGAGCGTT TCCCCGCCGA TCAAATCACT CTGCGGGTCG ATGCCAACGG AGCCTTTGCG
CCCGAGGAAG CGATGAAAAA ACTCGAACGG CTCGCAGGTT TTGACCTCCA TTCCATAGAG
CAGCCCATTC GAAAAGGACA GCCCGATCTG CTGGCTGACC TGTGTAAACA TTCGCCCTTA
CCCATTGCAC TGGATGAAGA GCTGATCGGA CAAATGGAGT ACGTTCATAA ATTCAGGTTA
CTGAAAAAAA TCCAGCCTCA ATACATTGTC CTGAAACCTA CCCTGCTGGG TGGCCTACGG
CATTGCGATG AGTGGATTGA ACTGGCTAAC CGACTTAACA TTGGCTGGTG GCTTACCTCG
GCTCTGGAGT CGAATATCGG CCTGAACGCG GTGGCCCAGT ATACAGCCCA GTTTAAACAC
CTGCTTCCTC AGGGGTTAGG CACCGGGCAA CTGTATCACA ACAATGTCGA TAGTCCTCTC
GTTGTCGAAC ATGGGCAGCT ACGGTACGAC CTTAGCCGAA GCTGGAATTT AGGGCCCCTC
TTTATGGATG CCTCTCACTA A
 
Protein sequence
MSLKADYLKY TLHFRFEAGT SRGTLTEKTS YIIRLSDDEN PTVIGYGECG PLKGLSYDDR 
PDFEECLRQY CDEFTAMDLQ LFSWNVPIIL NQVISPQFPS ILFGFETAML DFLMGGKRII
RPSDFISGQR SLPINGLIWM GSQSFMRQQI EEKLLAGYTT LKLKIGAIDF NQECDLLAMI
RERFPADQIT LRVDANGAFA PEEAMKKLER LAGFDLHSIE QPIRKGQPDL LADLCKHSPL
PIALDEELIG QMEYVHKFRL LKKIQPQYIV LKPTLLGGLR HCDEWIELAN RLNIGWWLTS
ALESNIGLNA VAQYTAQFKH LLPQGLGTGQ LYHNNVDSPL VVEHGQLRYD LSRSWNLGPL
FMDASH