Gene Slin_2014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2014 
Symbol 
ID8725752 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp2429925 
End bp2431790 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content49% 
IMG OID 
Productmembrane protein insertase, YidC/Oxa1 family 
Protein accessionYP_003386858 
Protein GI284036928 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.121616 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGTA ATCAACTTAT TGGCATTGTC CTGATTCTGG CGATGCTGGT CGGATACCAG 
CTGCTGGTAC CGAAACCTGC GCCCGAAAAA CAGGCTGCTC AACAAACACA ACCAACAAAA
CCCACCACTG CCTCCGGGGT TGCTGCTACG GATACAGGTG CAGCCAATAG CGCTCAACAA
ACTCCTGACT CGGCTGCCTT AACGGCTAAA TTTGGTGATT TCGCAACGGT TGCCACCGGC
CAGGCCCGTG ATATTGTCGT TGAAAATAAC GATATCAAAG TAACCTTTAC TACGCAGGGC
GGTCGGGTGA AGGAGGTTGT CCTGAAGAAG TACAAAACTT TTGATCAGAA GCCACTCGTT
CTGATTGACG AGAAAAGCAG TCAAACCCTT CTTGAACTCC CTACAAATCA GGGTAAGGTT
GATTTACACA AGCTATACTA TCAGACAACA GCGCAAGGTG GTACGGTTAG TGGTCAGGCG
CAGCAGCTTG TTTTTCGGGC AGAAGTAGCG CCGGGGCAGT CTGTTGAACA GGTGTACACG
ATTCCGGCCG AGGGGTATGT ACTCGACTAT GACCTTAAAC TGAACGGTCT GTCAAATGCG
ATCGGTACTG GCGATATCCG GTTCTTCTGG CAGGATAAAA TGCGGCAGTA TGAAAATGAC
CTGTCCAACA ACCGCCGGGC TGCTACCATC AATTACCTGA CGGCCGACGA AGATTTCGAG
AAATTAACCG AAGGCGAAAG TAACCAGGAA GCAACTGTTG AAGAACCCGT GCAGTGGTTT
ACCATCAAGC ATAAATACTT TCTGTCGGGT TTTGTTGCCA GAAACAGCCC GCTGACTAAG
GCAAATTTTA AAGCACTGGT CAATCCGGCC GACAGTAGCG TCGTAAAAAC AGCCATTGCC
GATGTAACCC TGCCCATTGC CGATGTAAAA GCCGGAAAAG GACAGTATAA ACTCTTCTAC
GGACCCAATG ATTTTCAGTT GCTGGGAAGT GTAGCCCCCG AATTTGATCA GAATGTATAC
CTTGGGTACT CCATCCTGAA GCCAATCAAC AAGTACTTCT TCGTGCCAGT ATTCAATTTC
CTGGAGAAGT TCATTGCCAA CTATGGCTTA CTAATTATTG CGCTGGTGGT GTTTGTGAAA
TTAATTCTAA CACCGTTAAC CTACAAGTCA TACATCAGTA TGGCCAAAAT GCGGGTTCTT
CAGCCGGAAT TGAACGAGAT GAAGGAGCGG GTTGGTGACG ACATGGCGAA GCAACAGTCT
GAGCAAATGA AATTGTATCA GGAAGTGGGC GTTAGTCCGC TGAGTGGCTG CGTTCCGGTA
CTGGCTACCA TGCCGATTCT GTTCTCGCTG TTCATGCTCT TCCCGAATTT GATCGAGCTG
CGCCAGAAAT CGTTCCTGTG GGCCAATGAC CTTTCGACCT ACGATGCGTT CATTACCTTC
CCGACCTTAC CCTTTATTGG CAGTCACCTG AGCTTGTTTA CGGTACTGAT GACGATTTCG
TCCATTGCGT ACGCGTATTA TAATAACCAG ACAACACCAA CGCAGCCGGG GCCCGTGAAC
ATGAAAGCCA TGAGCTATGT ATTCCCGCTT ATGTTCATGT TCGTTCTGAA CTCGTATCCG
GCTGGTCTGA CGTTTTATTA CTTTGTATCG AACGTTGTAA CGATTGCTCA GCAACAACTG
ATCCGCCGGT TTGTTGATGA AGATAAGATC AAAGCTGTTC TGGACGAAAA CCGTCGTAAG
AACGCAGCCG GAGAAGGCAA GAAGCCCGGC GGATTCCAGG CGCTGTTGCA AAAACAGTTA
GCTGCCGCCG AAGAGGCCCG TAAGCAGGCT GACGAAGCCC AGCGCCGAGC AAAGTCTAAG
AAGTAA
 
Protein sequence
MDRNQLIGIV LILAMLVGYQ LLVPKPAPEK QAAQQTQPTK PTTASGVAAT DTGAANSAQQ 
TPDSAALTAK FGDFATVATG QARDIVVENN DIKVTFTTQG GRVKEVVLKK YKTFDQKPLV
LIDEKSSQTL LELPTNQGKV DLHKLYYQTT AQGGTVSGQA QQLVFRAEVA PGQSVEQVYT
IPAEGYVLDY DLKLNGLSNA IGTGDIRFFW QDKMRQYEND LSNNRRAATI NYLTADEDFE
KLTEGESNQE ATVEEPVQWF TIKHKYFLSG FVARNSPLTK ANFKALVNPA DSSVVKTAIA
DVTLPIADVK AGKGQYKLFY GPNDFQLLGS VAPEFDQNVY LGYSILKPIN KYFFVPVFNF
LEKFIANYGL LIIALVVFVK LILTPLTYKS YISMAKMRVL QPELNEMKER VGDDMAKQQS
EQMKLYQEVG VSPLSGCVPV LATMPILFSL FMLFPNLIEL RQKSFLWAND LSTYDAFITF
PTLPFIGSHL SLFTVLMTIS SIAYAYYNNQ TTPTQPGPVN MKAMSYVFPL MFMFVLNSYP
AGLTFYYFVS NVVTIAQQQL IRRFVDEDKI KAVLDENRRK NAAGEGKKPG GFQALLQKQL
AAAEEARKQA DEAQRRAKSK K