| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2001 |
|---|
| Symbol | |
|---|
| ID | 8725739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 2416184 |
|---|
| End bp | 2417686 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003386845 |
|---|
| Protein GI | 284036915 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0783856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0172593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTATAC AGACAGAATC CGTAATTTCG TTCTTTAAAA GAAAACACAA CCCCAGTTTA
CACATGAAAC AAGTTTTTGT AATCGCCGTC GCGTGTCTCC TCTCACTAGG TGTACGCGCC
CAGCAGGCAG CCGGAGACGC GCTTGCTATG GAAGCATTTA AAAAAGAAAA GGAAAAGAGT
GATAAGGATA TTACGGATGC CAAAGCGGCT GCTAAAGCCA GCACCTGGAT GGATCGGGCC
AAAACGTATC AGAATATCGC TTCGCAGGGA CAGATGAAAA TCGATTCGGC TGCCGCTACG
ATTGCTTACG ATGCTTTCAA GAAAGTAGTT GAATTGGATA AGGACAAAAA AGGCGGTCCT
GGTAAATTAG CCAAAGAAGC AGAAGAAGCA TTAAAGGCTC CCCTTATGGC CACTGCTTTC
ATGCAGCAGG GCGTTGCCAA GTTCCAGTCG AAGAATTATG CTGACGCGAT GAAGTCGATG
GCCATAGCGG GCGACATTAA TCCAAAAGAT ACGCTGGCAC CGCTTTATAC GGCTATTGCT
GCCCAGCAGA TCCGGGATAA CGCAACGGCT AAAACTCAAC TGGAAAAGTA TATTACCAGT
GGAGGGAAGG ATGCAACCAT TTATGGTTCG TTAGCAATGC TATATCGGGC CGATAATGAA
GTTGATAAAG CCCTGGCTGC TTTGGATAAA GGTATCGCTT TGGCGCCGAC TAATAAAGAT
CTGGCCAATG AGAAGATCAA TATTATGCTG TCGACAAACC GAATGGATGA AGCCATCACG
GGTATGAAAG CGATGGTTGA GAAAGATCCG AACAACGTGC AGAATCTGGT AAACCTTTCG
ATTGTTTATA ATAACATTGC TAACAAGTCT TCTGAGGAGA TCCGCAAGTT AGAAGGAGAC
AGCAAAAAGG GTGGTAACAC CGCCAAGCAA TTAGCCGATG CCAAGAGTAT TATCGACGCT
TATAACGGTG AGATTGCCCG CTTACAGGCA TCGATCAAAA AGTCGCCTAA ACCCGAATTA
AAGCGTCAGC TAACAGATGT ACAGAAGCGT TTGGCAGAGC AGAAGACAGA AGTTGCCAAG
CTTGAAGCTG AGGCTAAAGA AGCGGCAGCA AATGCCGGTG CTGTCGCAGA CGGGGCGAAG
CGGTTAGGCG AACTCAAGCA GGCACAGGCC GAAAATAAGA AACAGGAGAA AATGTACCTG
GATAAAGCCT TGGCCATTGA TCCTAACAAT TACGATGCAA ATTTCAATAC AGCAGTTTTC
CTTTTCAACG AGGCTGTAGA AATGAAGCGT GGTGTAGACC GGATGGATAT GGCTGAGTAC
AACAAAAATG GTAAGGAACT GGATGGTAAA GTTTGCGGTA AGTTCAAGCA ATCGTTGCCA
TACTTCACCA AAGCTAAATC AATTAAAGAT GAAGCCGATG TGAACGAAAA CCTGACTAAT
CTTCAAAACA TTTTGAAACA GTACGAAGAG AAGAAGATTG TATGTATCGA ACCTGGTAAA
TAA
|
|---|
| Protein sequence | MLIQTESVIS FFKRKHNPSL HMKQVFVIAV ACLLSLGVRA QQAAGDALAM EAFKKEKEKS
DKDITDAKAA AKASTWMDRA KTYQNIASQG QMKIDSAAAT IAYDAFKKVV ELDKDKKGGP
GKLAKEAEEA LKAPLMATAF MQQGVAKFQS KNYADAMKSM AIAGDINPKD TLAPLYTAIA
AQQIRDNATA KTQLEKYITS GGKDATIYGS LAMLYRADNE VDKALAALDK GIALAPTNKD
LANEKINIML STNRMDEAIT GMKAMVEKDP NNVQNLVNLS IVYNNIANKS SEEIRKLEGD
SKKGGNTAKQ LADAKSIIDA YNGEIARLQA SIKKSPKPEL KRQLTDVQKR LAEQKTEVAK
LEAEAKEAAA NAGAVADGAK RLGELKQAQA ENKKQEKMYL DKALAIDPNN YDANFNTAVF
LFNEAVEMKR GVDRMDMAEY NKNGKELDGK VCGKFKQSLP YFTKAKSIKD EADVNENLTN
LQNILKQYEE KKIVCIEPGK
|
|---|
| |