| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1842 |
|---|
| Symbol | |
|---|
| ID | 8725579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 2225604 |
|---|
| End bp | 2226467 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003386686 |
|---|
| Protein GI | 284036756 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAA GACGTTCGTT TCTTAAACAT ACAGGGGGGA GTCTGGCATT GGCCAGTGTG
AGTCCGGCCC TATCGTTGGC CAATTCGCCC GAAACGCGCG GCAATTCCGG CGATGACCTA
TTTAAGCTGG GTATGGCGGG CTTCACGTTT GTTAATTTCA AGCTCGATCA GGCCCTTGAG
ATGATGCGGA AGACCGACGT TCATTACCTG TGTATCAAAG ATTTTCATCT GCCCTACGCC
AGCACTGCCG ATGAAATTGC CGCCTTTCAC GAAAAGCTGA AGCAGTCGGG TGTGACGGGC
TATGCCGTGG GGCCGATTTA CATGAAAACG AAGCAGGAGA TCGACAATGG CTTCGACTAC
GCCAAACGGG TGGGCGTGAA CCTCATGGTT GGTATTCCCA ATCCGGAAGA CTTGCCGTAC
ATCGACAAAA AGGTAAAAGA GTATAACATC CGTTATGCCA TCCATAACCA CGGGCCGGAC
ATTCCACTAT TTCCCAGCGC CACATCGGTC TATACCGCCG TGAAAGATCT TGACCCGCGT
ATCGGGCTTT GTTTCGATAT GGGGCACGAT AAGCGTTTTG GCGATGACCC CATTGCCGAC
CTAGAGAAGT ACGCCAAACG GATATTCGAT ATTCACCTGA AAAACGTCAC AGCGGCCTCA
AAAGAAGGGA AGACCTGCGA ACTGGGCCGG GGCGTGATCG ATATACCGGC GTTTGTGAGC
ATGCTTCGTA AGATAAAATA TGATGGCTCC TGTAGTCTCG AATACGAGAA AGACATGAAA
GATCCACTGG CCGGAATCGC CGAATCCGTC GGGTACTTTA AAGGGGTATG TGATACGTCA
AAACCGGGTA AGAGAAAGGC CTAA
|
|---|
| Protein sequence | MTTRRSFLKH TGGSLALASV SPALSLANSP ETRGNSGDDL FKLGMAGFTF VNFKLDQALE
MMRKTDVHYL CIKDFHLPYA STADEIAAFH EKLKQSGVTG YAVGPIYMKT KQEIDNGFDY
AKRVGVNLMV GIPNPEDLPY IDKKVKEYNI RYAIHNHGPD IPLFPSATSV YTAVKDLDPR
IGLCFDMGHD KRFGDDPIAD LEKYAKRIFD IHLKNVTAAS KEGKTCELGR GVIDIPAFVS
MLRKIKYDGS CSLEYEKDMK DPLAGIAESV GYFKGVCDTS KPGKRKA
|
|---|
| |