| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1833 |
|---|
| Symbol | |
|---|
| ID | 8725570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 2211451 |
|---|
| End bp | 2212881 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | leucine-rich repeat-containing protein typical subtype |
|---|
| Protein accession | YP_003386677 |
|---|
| Protein GI | 284036747 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.113448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.602761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATG GTCTTCTGTT CGTTCTTTTC GGGTTACTGG CGTTACCGGG TTTAGCGCAG
GACCGGATTG TTTTACTTCG CGATACCACG CGCCTACACC TTTCCGTAGC GGAGCTGAAC
AAAAAATACC CGCCTGCCTT TCCTCAAAAA GCGGGCGAGA AAGCTGTTTT TGAACGGCAC
GGAAAGATGT TTATGGATAC GCTGCACGCC GGACAACAGC AGTTTTTCAC CTTTATCGAA
CGGAATAAAA AACGATTACC CAAGCCGGGT ATCATGATTC AAACCCAGGA ATTCATTCGG
CCGGATGGAA GTTACGACCG GGTATTTTGT GATTTCTCCG GCACGGACTT AACGGATCAG
CAGGAATTTC AGCTTCTCCA ACTCATGGCC GAATGGTATG GCCAACATCC ATTTCCGATA
AAAACCCCGG CTGGTTTTCG GTGGGGTGGC ATGACGATAC TGGGCAATGT GCAGCAGAAA
CGCACCGTCC GCAAAGGAAC GGGTGTTATC AGTACGCTGG AAGCAGCTGA ACAAACAACT
CGCCCGGATA CGGTAACCAT GCTGGCCTTT AATCAGTTAG ACCTAACAAA CATTCCGGAA
GTTATATACC GATTCCCAAA ATTGGAGGAA CTGGATCTAT CAAAAAACGG CCTCCATGAG
TTACCTGCCC GCCTGACCGC CGATATTCCA ACCCTGAAAC GACTCAGTGT TTTGTACAAT
TCGATACCAA ATGACAGCGT GTTCATTACT CGCAACAAGC ACCTTGTTTC ATTGAATCTG
CAAGGCAACC GACTCACACG CATTCCGCCA TCTGTCCGGC AAAACCGTCG CCTGGAGAGC
CTGTGGATGG GAAATAATAA ACTGGCAGGT ATCGACGTCA AAACCCTGAA GCGAATGCGT
CGCTTAACCG ACCTTAACCT CTATAGTGCG GGATTGACCC AGCTCCCCAA AACCATCGGC
CGTCTGAAAC GTGTTAAGGT GCTGGATTTG TACTACAACA AACTCACCGA ACTGCCCAGT
CAGCTCGGCC GCATGAAACG ACTGGAGCAA CTGGCTGTTG CCCATAACGA TTTACATGCC
TTGCCTCCAT CTTTGGCCCA CTTGCGCCGG TTGCAGGTAC TTTTCGCCCA TCATAACCGT
ATTAGCCAGC TTCCCAACGA ATTTGGCCGG TTACAGCGGC TGAGGGTCCT CGATCTTGGT
TTTAACTGGT TCAATGTCGT ACCTGGTACA GTTGGCTCAC TTTCTGCGCT GGAAGAAGTG
GGCTTCAATA ATAACAACCT ACGGGAATTT CCAACGGCCC TCATTCTGCT GAGGAATCTG
AAAAAAGTGT ATCTGGGGAG CAATCCACTG TTCGGAGATG AAGCGATGAG TAGTCCTTAC
GCCAGCCAGA TCAGGCAGTT GGAAGCGAAT AACACGCAGG TGACCTATTG A
|
|---|
| Protein sequence | MKNGLLFVLF GLLALPGLAQ DRIVLLRDTT RLHLSVAELN KKYPPAFPQK AGEKAVFERH
GKMFMDTLHA GQQQFFTFIE RNKKRLPKPG IMIQTQEFIR PDGSYDRVFC DFSGTDLTDQ
QEFQLLQLMA EWYGQHPFPI KTPAGFRWGG MTILGNVQQK RTVRKGTGVI STLEAAEQTT
RPDTVTMLAF NQLDLTNIPE VIYRFPKLEE LDLSKNGLHE LPARLTADIP TLKRLSVLYN
SIPNDSVFIT RNKHLVSLNL QGNRLTRIPP SVRQNRRLES LWMGNNKLAG IDVKTLKRMR
RLTDLNLYSA GLTQLPKTIG RLKRVKVLDL YYNKLTELPS QLGRMKRLEQ LAVAHNDLHA
LPPSLAHLRR LQVLFAHHNR ISQLPNEFGR LQRLRVLDLG FNWFNVVPGT VGSLSALEEV
GFNNNNLREF PTALILLRNL KKVYLGSNPL FGDEAMSSPY ASQIRQLEAN NTQVTY
|
|---|
| |