| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1533 |
|---|
| Symbol | |
|---|
| ID | 8725267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 1850839 |
|---|
| End bp | 1852182 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | 3-oxoacid CoA-transferase, B subunit |
|---|
| Protein accession | YP_003386381 |
|---|
| Protein GI | 284036451 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.172337 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TACCTGTTTT AGACGTCCAT ACGGCCGCGG CTCTTGTTAA AGAAGGCGAT
ACGCTCTTGC AGGGCGGGTT TGGTATGACC GGCAACCCTG TTCACCTGAT GCACGCACTG
GCCGAAATCG GCACCAAAAA CCTGACTTTC ATAGGCAATA ACACTGGCGA AACGGGTCTG
GGCGGGGGAC GCCTGCTACG AAATGGCCAG CTCAAAAAAC TGATAGGCTC CTTTTTTACA
TCGAACCCCG ATGCGGTCAA AGCCGCGCAA AACGGCACGG TCGACTACGA ATTACTGCCA
CAGGGAACCC TGGCCGAAGC TATTCGGGCG GGTGGCGCGG GTATCGGCGG TTTTTATACG
CCAACCTCTG CAGGCACACC GCTGGCTCAG GGTCGCGAGA CCAAAGTCAT CGATGGGGTC
GAGCAGGTAT TTATCAAGAG CATCCGGGGC AATGTGGCAT TCATTCGGGC GTGGCGGGCC
GATACGGCTG GAAATCTGCA ATACCGAATG ACAGAAAACA ACTTCAACAA AGCGATGGCC
ACGGCCGCTG ATCTGGTCAT TGCCGAAGTG GAGGAGATTG TCGCTGTGGG CGAAATCGCT
CCTGAGTTCG TGCATACGCC CGGCTGCTTT GTCGATTACC TGGTGCAGGC CACGCTAACG
CTGGAAGACC TCGGCAGTTC GGCGTCGGTG TCGTCATCGA AGAAAGTCGA CGAGTCCCGT
ATGAATATGG CGCGTCGGGC ACTGGCTGAG TTAAAGAAAG GTGACGTTGT CAATCTGGGC
ATCGGCATCC CCACGCTCGT CGCCGATCTG ATCACGGAAG AGCAGGGCAT TATTCTGCAT
ACTGAAAATG GGATGCTGGG CGTTGGTCCG GTACCGGCGG ATGGCGGTGG TGCGATGGAT
TACCCGGTCA ATGCCGGTAA GATTCCAGTA ACGGCCCTGA AAGGCAGCAG CTATTTCGAC
AGTGCTGATT CGTTCGCCAT GATTCGGGGT GGGCATATCG ACGTGGCGAT CATGGGCGGC
CTCGAAGCTG ACGAAGCGGC CAATCTAGCC AACTGGGCTG TTCCCGGCAA GCCGCTGCTG
GGCGTTGGTG GCGCAATGGA TTTGGCGAAA GGAGCCAAGC GATTGATCAT CACCATGACC
CACACCAACC CCGATGGATC GCCCAAGATT GTACCGCAAT GCACCCTGCC GCTAACCGCT
ACCGGCGTGG TCGACCTGGT CATCACCGAT CTGGCCGTCT TTGGCTACCC TAACGGAAAA
CTAACCCTGC TCGAACTAAT GCCCGGTGCA ACGCTGGAGG AGGTACAGGC TAAAACAAGT
GCGAACTTTT CAATGAGTGA ATGA
|
|---|
| Protein sequence | MKKVPVLDVH TAAALVKEGD TLLQGGFGMT GNPVHLMHAL AEIGTKNLTF IGNNTGETGL
GGGRLLRNGQ LKKLIGSFFT SNPDAVKAAQ NGTVDYELLP QGTLAEAIRA GGAGIGGFYT
PTSAGTPLAQ GRETKVIDGV EQVFIKSIRG NVAFIRAWRA DTAGNLQYRM TENNFNKAMA
TAADLVIAEV EEIVAVGEIA PEFVHTPGCF VDYLVQATLT LEDLGSSASV SSSKKVDESR
MNMARRALAE LKKGDVVNLG IGIPTLVADL ITEEQGIILH TENGMLGVGP VPADGGGAMD
YPVNAGKIPV TALKGSSYFD SADSFAMIRG GHIDVAIMGG LEADEAANLA NWAVPGKPLL
GVGGAMDLAK GAKRLIITMT HTNPDGSPKI VPQCTLPLTA TGVVDLVITD LAVFGYPNGK
LTLLELMPGA TLEEVQAKTS ANFSMSE
|
|---|
| |