Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_1257 |
Symbol | |
ID | 8724990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 1536930 |
End bp | 1540973 |
Gene Length | 4044 bp |
Protein Length | 1347 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | glycoside hydrolase family 2 sugar binding protein |
Protein accession | YP_003386106 |
Protein GI | 284036176 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.618189 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATTA TCACGCCAAC CGGCATTCTG GACATTCGTA AAAAACAGCC TGCACAGCCA GCGGCCGTTG CCGAATCATT TGCCGATGCG TTCCTTAATC CGCCAGCCTC GGCACGGGCG CAGTGCTGGT GGCACTGGAT GAACGGCAAC GTCACCGCCG ACGGGATCAC CCGCGATCTC GAAGCCATGA AGCAGATCGG GCTGGGTGGG TTCCAGAACT TCGACGCCGG CACGGGTATT CCCAAAGGTC CCGTGGTGTA TCTGAGTCCC GAATGGCTGG CGCTGAAAGA GCATACCATT AAGGAAGCGG AACGGCTCGG GCTGGAGTTT ACCATGCATA ACTGCCCCGG CTGGTCGTCG AGTGGCGGGC CGTGGATTAC GCCCGAACTC GCTATGCAGC AGGTGACCTG GAGCGAAACG GTTATAACGG GTGGACAGGC CGTAAGCATC CCACTGGCTC AACCGCTCAC CAACCTGAAT TATTACCGGG ATGTGGCGGT CATCGCGTAT CCGTCGCTCC CCGGCGAAGT GTCGCTCCCG ACCGTTGTTC AGCAGATTAG CGCGAATGGG GGCGGGGTGG TTTCTGCCGA TGAACTGGCT GGAAGCAAAG GTGTGTCGAT AGTTGGGGAT GCCGACGATA AACCTGTTAC ACTACTTATT GAATTCAAAC AGCCCTACGA AGCGCATTCC CTTGCGTTTT TGAGCAAACC CCTGGGTAAA CCCCGGCCAT CGGGTGGTTT TGGGGGCGGT CCGCAACTAA CGCTTGAGGT GTCGGACGAT GGACAGCAGT TTCGTAAACT AACGTCGATT GGCACCGGCC GGTCGTCGGA ACTGTCGCTG AGTCTGGCGG AGTTCCCGGC TGCGAAAGCA AAGTTTTTTC GGATCACATC GCCCGGCGCA CGTCAGTTTG CCCAGCTTCG GTTTTCGGGA GCCGCGCGGC TGGCCGACTG GCGAAAGAAA GCCAACAGTG CCTTTGGCGT GATGGGCGTT ACGCCCGACC AGGACGGCAG CAGCAAAGCC GCGATCAAGC TGGATTCACT TGTTGACCTG ACCCGGTTCG TGAAAGACGG GATACTAACC TGGACGGCCC CTGCAGGCAA CTGGACGGTA CTACGGATGG GTTACACGCC TAACGGCGAG ATGAACCGGT CGGCCCCCGA TACGGGTGTG GGGCTGGAAT GTGATAAATA CAGTGCAGTC GCCATTGATT TCCATTTCAA CAAAATGATG GAAAACCTGC TGCCAACGCT CGGCCCAATG GCGAAAAAAG GCCGCGTCGG GATGCTCATC GACAGTTACG AAGTGGGTAT GCAGAACTGG ACGGCACAGT TTCCGCAGGC GTTTCAGGCC CGCTCGGGTT ATTCGCTCCT CAACTATCTT CCGGCATTTA CCGGGCGCAT CGTGGGCGAT GTCGACACCA CCGAGCGGTT CCTGTGGGAT GTACGCCGAA CCCAGGCCGA CCTCATCGCT GATAATTATT ATGGCCGATT CCGCGAGTTG TGCCATAAAA ATGGCATTAC GGCCTATACC GAGCCTTACG ACCGGGGGCC AATGGAAGAA ATGCAGATCG GTGCCCGCGT CGACGTGAAC ATGGGTGAAT TTTGGAATGG TCTTTCGGCC ATCTTTCAGA ACAACCTGAC CATGCGCCGG ACTACCAAAC TGGCGGCTTC CATCGCCCAT ATTAACGGGC ATGCCGTTGG GGGAGGCACG CCAGATAATC CGCAAGTGGT GGGAGCGGAA GCCTTCACTG GCGAACCCGA ATCGGCGCGC TGGCAGGAGT ATCCTTTTGC CATGAAAGCC CTGGGCGACA AGATGTTTAC GCAGGGACTG AACAAGATTA TCTTTCACCG GTACGCGCAC CAGCCCCACC CAACCGCCGT GCCGGGCATG ACGATGGGGC CGTGGGGCAT TCACTTCGAC CGGACAACGA CCTGGTGGAA TCAGGGACGG TCGTGGCTGG ATTACATTGC CCGTTGCCAG AGCCTATTAC AGCAGGGGCT GTTCGTGGCC GATCTGGCGT ATTTCACCGG CGAAGACGGC AATCAGTACA CGAAAGTAGA ACCCCACGAG TTAACCCCAA CCCCGCCGGA GGGTTACGAT TACGACCTTA TCAATGCCGA AACGATCATC AAACGAGCCA GCGTATCCAA CGGAAACCTG GCCCTGCCCG ACGGCATGAG CTACCGGGTG CTGGTGCTTC AGGATCATAA GGCGTTAAGT ATTGAGCTGG TTCGGAAACT ACGGGAGCTG GTCAATGGCG GACTTATTCT GGTCGGCTCC AAACCTGCAA CGTCGCTGGG GTTACGGGCG AAAACGCAGG GGAATGATGA ATTTCAACGA CTGGTGGCCG AGATTTGGGG GGCTGATAAC GTTACCGAAA ATCGGTTGGG GAAAGGACGC GTTTTTCGGA CGCAGCCAAT GCAAACGGTG CTGTCGGCTC TCGCCATAAA ACCTGATTTC GAGGTTACGT CCCGCTCCGG CGATGCGCCC GTTACGTACA TTCACCGGCG CATCGGCAAG ACGCAGGTGT ACTTTCTGGC CAATCAGCGA CGAACCCCCG AAGAACTGGT TTGCACCTTC CGCGTCGACG GTATGCAGCC CGAACTCTGG GATGCCGCAA CGGGTAAACA GACACCATTG ACGCTCTATT CCGCTGCAAA TGGGCAAACG CAGGTGCCCG TTCAGCTCGA TCCGGCGGGT TCGGCCTTTA TCGTGTTCCG CGCAGCAGCC AAACCAAAAC AACTGCAATC GGTCAGCAAC GGAAGCGGGG TTGTTCTGAC GAATAAACCC TTTTCAGCCC CCGCCCGAAA ATTATACAAA GACGTTTCGA ACAACTTTAC TATCAGTCTG TGGGCCAAGC CAGAGTTGAA CATTATGCTG TCGACGAGTG GCTTTCTGGA CACGGTAAAA AACTCCTGGA CAGATTTTTA CGCCCTGTAT CCGCCCGCCG GAACGGACTT GTACGGGGAA GGGCACGCAG CCTGCGGATT GGCCATCGGG CGGAATGGCG TGGCTGTCTG GGAGCGTACG ACCGGCAACC CTGTCTTTAA ACTGGCGGCC CCAACGGAAC TATCCGGCTG GTCACACATT GCCCTTGTGT ATTCTGATGG TATCCCGGCG GTGTATGTCA ACGGCAAACT GATTCAGCGG GGAAAAGCCG CCGGAAGCAT CGTTCACCCC GGTCTGGGAC AAGCCTATCT GAGCGATGGT GCGTCATTCT ACAACGGCGA CCTGAGCGAA CCGCAGTTGG TAGCAGGGGC CATAACCGAA GACCGGATTC GTCAACTGGC CACCGAGCCT CGCCCGAAAC CGGTAGATAT GCCCGCTGTG CAGCTGGCTA CGAATGGTAT ACCGGGCCTG CGTTTCTGGC AGAACGGCCG GTATACGCTG CAATACAGCG ATGGTCGAAA AATGCCGGTA ACGGTTTCCG GTATCGCTCA GCCGATGGAA TTAACGGGGC CGTGGCAGGT CAGCTTCCCC CCCAATCTGG GTGCCCCGGC ACAGATTACT CTTCCCAAAC TAATGTCGCT CAGCAGCCAT GAACAGGACG GGGTGAAGTA CTTTTCGGGG ATAGCCAGTT ACAGCAAATC GTTCACAGTA GCGCCCGGTT CGCTCGGAAA AGGCAAAAAA CTCATGCTGG ATCTGGGTCG AGTGGAAGTG CTGGCGGGTG TTCGGGTCAA CGGCACCGAG CTGGGCGTGT TCTGGAAGCG TCCGTTTTTG GTCGATATTA CCGACGCCGT AAAGCCCGGT GTTAATACGT TGGAAATTGC TGTAACCAAC CTCTGGCCCA ACCGCCTGAT TGGGGACGAG CAATTGCCTG ACCCCGATAA ATTTACCCCC GGCGGTGGGG CCAATGGCAT TGCCAGTCTG AACAATGGAG CGATCGTGGA GCTACCCGCC TGGTACAAAG AAGGCAAACC CAAACCCGCC GACGGCCGGG TAACGTTCAC CACCTGGAAG CACTACAAAA AAGATTCACC CCTACTGGAT TCGGGCCTCA TTGGTCCGGT AATGTTGAAA GTAGCCGAAG ATGTAGCGAT ATAA
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Protein sequence | MAIITPTGIL DIRKKQPAQP AAVAESFADA FLNPPASARA QCWWHWMNGN VTADGITRDL EAMKQIGLGG FQNFDAGTGI PKGPVVYLSP EWLALKEHTI KEAERLGLEF TMHNCPGWSS SGGPWITPEL AMQQVTWSET VITGGQAVSI PLAQPLTNLN YYRDVAVIAY PSLPGEVSLP TVVQQISANG GGVVSADELA GSKGVSIVGD ADDKPVTLLI EFKQPYEAHS LAFLSKPLGK PRPSGGFGGG PQLTLEVSDD GQQFRKLTSI GTGRSSELSL SLAEFPAAKA KFFRITSPGA RQFAQLRFSG AARLADWRKK ANSAFGVMGV TPDQDGSSKA AIKLDSLVDL TRFVKDGILT WTAPAGNWTV LRMGYTPNGE MNRSAPDTGV GLECDKYSAV AIDFHFNKMM ENLLPTLGPM AKKGRVGMLI DSYEVGMQNW TAQFPQAFQA RSGYSLLNYL PAFTGRIVGD VDTTERFLWD VRRTQADLIA DNYYGRFREL CHKNGITAYT EPYDRGPMEE MQIGARVDVN MGEFWNGLSA IFQNNLTMRR TTKLAASIAH INGHAVGGGT PDNPQVVGAE AFTGEPESAR WQEYPFAMKA LGDKMFTQGL NKIIFHRYAH QPHPTAVPGM TMGPWGIHFD RTTTWWNQGR SWLDYIARCQ SLLQQGLFVA DLAYFTGEDG NQYTKVEPHE LTPTPPEGYD YDLINAETII KRASVSNGNL ALPDGMSYRV LVLQDHKALS IELVRKLREL VNGGLILVGS KPATSLGLRA KTQGNDEFQR LVAEIWGADN VTENRLGKGR VFRTQPMQTV LSALAIKPDF EVTSRSGDAP VTYIHRRIGK TQVYFLANQR RTPEELVCTF RVDGMQPELW DAATGKQTPL TLYSAANGQT QVPVQLDPAG SAFIVFRAAA KPKQLQSVSN GSGVVLTNKP FSAPARKLYK DVSNNFTISL WAKPELNIML STSGFLDTVK NSWTDFYALY PPAGTDLYGE GHAACGLAIG RNGVAVWERT TGNPVFKLAA PTELSGWSHI ALVYSDGIPA VYVNGKLIQR GKAAGSIVHP GLGQAYLSDG ASFYNGDLSE PQLVAGAITE DRIRQLATEP RPKPVDMPAV QLATNGIPGL RFWQNGRYTL QYSDGRKMPV TVSGIAQPME LTGPWQVSFP PNLGAPAQIT LPKLMSLSSH EQDGVKYFSG IASYSKSFTV APGSLGKGKK LMLDLGRVEV LAGVRVNGTE LGVFWKRPFL VDITDAVKPG VNTLEIAVTN LWPNRLIGDE QLPDPDKFTP GGGANGIASL NNGAIVELPA WYKEGKPKPA DGRVTFTTWK HYKKDSPLLD SGLIGPVMLK VAEDVAI
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