| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1247 |
|---|
| Symbol | |
|---|
| ID | 8724980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 1521245 |
|---|
| End bp | 1522822 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | Mannitol dehydrogenase domain protein |
|---|
| Protein accession | YP_003386096 |
|---|
| Protein GI | 284036166 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0588834 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCT TATCGATAAC GACGCTCGCC ACGCATGCTT GCCCAACCGC CATCAGCCTG
CCACCCGCCC ATGTTCAGCG ACTGCCCGAG CGGGTTTTGC AGTTCGGAAC GGGCGTTCTG
TTGCGTGGCC TGCCCGATTA CCTGATTGAT CGAGCCAATC GGCAGGGTAT TTTCAATGGC
CGTATCGTCG TTGTCAAATC AACCGATGGG GGCGATATGA CCGCGTTCGC CCGGCAGGAC
AATTTGTATA CGCTCTGCAT CCGGGGCATC GAAAACGGGC AGACGGTCGA AGAAAATGTA
ATCTGTTCGG CCATCAGCCG TGTGTTATCG GCGAAACAGC AATGGGATGA AATTTTACAC
CTTGCCGCCA GCCCGGATTT GCAAATCGTG ATTTCAAACA CCACGGAAGT AGGTATTCAG
CTAACTCAGG ACAGCATTCA GCTGTCGCCC CCGGACTCAT TTCCCGGTAA GTTACTGGCC
GTCCTGTACG CCCGTTACAA AGCCTTTTCC GGCGACCTCA ATAAAGGATT AGTTATAGTT
CCAACCGAAC TCATTCCCGA TAATGGGACG GCGCTGGCAG CTATTTTGCG TGAACTGGCA
CACCGCAACG AACTCGGAAG TGAGTTCATT CACTGGCTTG AAACAGCCAA TACCTGCTGC
AACTCGCTGG TCGACCGGAT CGTACCCGGA CACCCCGACG CAGCAACCCG GAAAGCGCTC
ACCGAAGAGC TTGGCTACGA AGATGACCTG CTGACCATTT CGGAAGTGTA CCGATTATGG
GCCATTGATG TGCCCGCCGG TTCTGACGAA GCGCATATCA AACATACGCT GTCCTTTCAT
CAGGCCGACA GTTCCGTATT TATTCAGCCC GACATCGACC TCTTTCGGGA GTTGAAGTTG
CGGCTGCTCA ATGGCACACA CACATTGAGT TGCGGGCTGG CCTTTCTGGG CGGCTTCACT
ACCGTTCGCG AGGGAATGGA AGATGAGCAA TTGTCGGCTT TCGTTAGCCG GGTCATGCTA
ACCGACCTCA TTCCGGGCAT TCCCTACCCG ATTGACGAGG CCGTAGCCCG GCGTTTCGGT
ATGCAGGTTC TCGACCGCTT CCGCAACCCC TTTATCGAAC ATCGCTGGCT GGGCATCACC
ATGCAATATT CGGCCAAAAT GAAGATGCGG ATTATTCCGG TTCTGCTCCA TCACTACGAA
CAGGCCGACG CAACAACCCA ACCGGCCACT CCGCAGTATA TAGCGTTAGG CTTTGCGGCT
TATCTGCTGT TCATGCGGGG CGTAACCCAA AAGGAGAACG TCTGGCAGGG CGAACGGGCT
GGCGAAGCAT ACCCCATCAA CGATAGCCAG GCGGATTACT TCGCCGGATT ATGGGCCGGG
TTATCGCCCG CAGCACTTGT CGATACAACC CTGAAAAACA CCGACCTGTG GGGGACCGAT
CTGAGCCGTT TACCCGGTTT CGCCGAGGCT GTCAGCCATA ACCTGCTTCA ACTGCTCGAA
CAGGGTGCTA CCGCAACCCT GGCGGCCCGG ATTGACGCGT ACGGAACGGT CGTAAGCGAG
TCAATGGAAA CTCGTTGA
|
|---|
| Protein sequence | MSTLSITTLA THACPTAISL PPAHVQRLPE RVLQFGTGVL LRGLPDYLID RANRQGIFNG
RIVVVKSTDG GDMTAFARQD NLYTLCIRGI ENGQTVEENV ICSAISRVLS AKQQWDEILH
LAASPDLQIV ISNTTEVGIQ LTQDSIQLSP PDSFPGKLLA VLYARYKAFS GDLNKGLVIV
PTELIPDNGT ALAAILRELA HRNELGSEFI HWLETANTCC NSLVDRIVPG HPDAATRKAL
TEELGYEDDL LTISEVYRLW AIDVPAGSDE AHIKHTLSFH QADSSVFIQP DIDLFRELKL
RLLNGTHTLS CGLAFLGGFT TVREGMEDEQ LSAFVSRVML TDLIPGIPYP IDEAVARRFG
MQVLDRFRNP FIEHRWLGIT MQYSAKMKMR IIPVLLHHYE QADATTQPAT PQYIALGFAA
YLLFMRGVTQ KENVWQGERA GEAYPINDSQ ADYFAGLWAG LSPAALVDTT LKNTDLWGTD
LSRLPGFAEA VSHNLLQLLE QGATATLAAR IDAYGTVVSE SMETR
|
|---|
| |