Gene Slin_0827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0827 
Symbol 
ID8724558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp1005514 
End bp1006053 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content45% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003385688 
Protein GI284035758 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.843783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.883408 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATGA ATTATAAACG CAAAAAAGAG CCTCTGGAAA GCCGTCAAGC CGTCCTGGAG 
GCAGCTTTTG AATTAATACC TGAGATAGGC CTGGATAAAC TGACGCTTGA TGCGGTGTCG
AAAAAAGCCA AGTTGAGTAA AGGGGGATTG TTACACCATT TCCCCAAAAA GGACGCACTC
ATTAATGCCC TGTTTGCTGA CAGCCTGCAA AAATTCTCGG ATACAATGAG CCGGGCGAAA
CGAGATAACG AATCGTTTGC CATCACTTAC CTAAAAGCCA TTGTCAACGA TAAGCCCGAT
CCGTTGCAAA AGCGCTCGAT GCATCTTCTT ATGCAGGCGG CTATTCACAA TGGTTCCTAT
CGTGAGTTAT TAGCCCAGTG GTACCAAAAA AATGTGATGA GTGAAGCGGT CAACAACTCG
CCTGCGGCAC TAACGGCCAT TTTGGTGGCT GATGGTATTT GGTACGCTAA TTTGTTTGGT
GCCTATACGC TGACCCGGGA ACAAAAAAAT CAAATTATAG ACCTCATAAG CAACTTATAA
 
Protein sequence
MNMNYKRKKE PLESRQAVLE AAFELIPEIG LDKLTLDAVS KKAKLSKGGL LHHFPKKDAL 
INALFADSLQ KFSDTMSRAK RDNESFAITY LKAIVNDKPD PLQKRSMHLL MQAAIHNGSY
RELLAQWYQK NVMSEAVNNS PAALTAILVA DGIWYANLFG AYTLTREQKN QIIDLISNL