| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0631 |
|---|
| Symbol | |
|---|
| ID | 8724360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 791884 |
|---|
| End bp | 793335 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_003385493 |
|---|
| Protein GI | 284035563 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0369917 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAT TAAGTCTTTC TCAATCGCTT CAGCAAAAGC TCTCCCCGCA GCAGATTCAG
TTCATCAAAC TGCTACAGAT ACCTACCGCT GAACTGGATA CCCGTATTGA AGAAGAACTG
GAAATAAATC CAGCTCTGGA AGAGGGCATG GACGAGGAGT TTGACCAGAA AGAGGATGAC
GACCCCTACG ACGATACTGA CGATTTTAAG GACCGCGACG ACGACCTCGA CATCGACGGC
TACATACAGG ACGAAGACTA CGCAGGCTAT AAAATGCAGG GCGATGGCAA TTACGGGGAA
GAAGACCGGG ATATGCCCCT GGCCACTAGT TCCAGCCTGA TGGACTCGCT GCTTCAGCAG
TTTGGCTACC TGAACCTAAC GGAGGAACAG CGCACCATTG GCTATCAGCT TATTGGCAGC
ATTGAGGCCG ATGGCTACAT CCGCCGGTCG GTGCAGGCCA TTGTCAACGA TCTGGCCTTC
TCCCAGAATG TATTTACCGA TGCCGAAGAA GTAGAGGATG TGCTGCATAA AATCCAGTCG
TTCGATCCGG CCGGTATTGG TGCCCGCTCC CTGCCCGAAT GCCTGCTGCT GCAACTCCGG
CGCAAGGACC AGTCCGACCC TTATAACATC CTGGCAATCC GGATCATCGA CGAGTTCTTC
GACGAATTTT CAAAAAAACA TTACGACAAA ATTCAGCGCC GACTCAACAT AAGTGATGAG
TCGCTGAAAA AAGTGATCGA CATTATCATC CGGCTCAATC CCAAACCCGG ATCGATGGAG
GGCGAAGCGG GAAATATACA GTACCTCATT CCCGATTTTC TGCTGACCAA CAACAACGGC
AAACTTGAAC TATCGCTGAA TTCGAAAAAC GCGCCCGAAC TGCGCATCAG CCGTTCCTTT
GCTGATATGC TCGATACCTA CGACAAGAGC AACAAAAAGC AGAACAAGAA CCTGAAAGAA
ACGGTCTCAT TCGTTAAGCA GAAACTCGAC GCGGCCAAGT GGTTCATCGA CGCCATCAAG
CAACGGCAGC AAACCCTGCT CCGCACCATG AACGCCATTG TGCGTTATCA ATATGACTTC
TTCCTGACCG GCGATGAGTC CCGGCTGCGG CCCATGATTC TCAAAGACAT TGCCACGCTC
ATCGACATGG ACGTGTCGAC GGTGTCGCGG GTAGCTAACA GCAAGGCAGT TCAAACCGAA
TTTGGCATCT ATCCGCTCAA ATATTTCTTC TCGGAGGGTA TCTCGACCGA TACCGGCGAG
GATGTCAGTA GCCGGGAGGT GAAGAACATT CTGAGAGATC TGATCGATGC CGAGCCCAAA
CTTCACCCGC TGTCGGATGA CAAACTTGAG AAAATCCTGA ACGACCGCGG CTACAACATT
GCCCGGCGAA CGGTAGCCAA ATACCGCGAG CAGTTGAATA TACCCGTGGC GCGACTGAGG
AAACAGTTAT AA
|
|---|
| Protein sequence | MQKLSLSQSL QQKLSPQQIQ FIKLLQIPTA ELDTRIEEEL EINPALEEGM DEEFDQKEDD
DPYDDTDDFK DRDDDLDIDG YIQDEDYAGY KMQGDGNYGE EDRDMPLATS SSLMDSLLQQ
FGYLNLTEEQ RTIGYQLIGS IEADGYIRRS VQAIVNDLAF SQNVFTDAEE VEDVLHKIQS
FDPAGIGARS LPECLLLQLR RKDQSDPYNI LAIRIIDEFF DEFSKKHYDK IQRRLNISDE
SLKKVIDIII RLNPKPGSME GEAGNIQYLI PDFLLTNNNG KLELSLNSKN APELRISRSF
ADMLDTYDKS NKKQNKNLKE TVSFVKQKLD AAKWFIDAIK QRQQTLLRTM NAIVRYQYDF
FLTGDESRLR PMILKDIATL IDMDVSTVSR VANSKAVQTE FGIYPLKYFF SEGISTDTGE
DVSSREVKNI LRDLIDAEPK LHPLSDDKLE KILNDRGYNI ARRTVAKYRE QLNIPVARLR
KQL
|
|---|
| |