| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0619 |
|---|
| Symbol | |
|---|
| ID | 8724347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 773993 |
|---|
| End bp | 777643 |
|---|
| Gene Length | 3651 bp |
|---|
| Protein Length | 1216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | Polymorphic membrane protein |
|---|
| Protein accession | YP_003385482 |
|---|
| Protein GI | 284035552 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.418961 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA AGTTTACCTG TTTCTTTATC AAACCCCCTG CTTACCTGCC CGGCCTTCTG
CTGGGTGTAG CCTTATTGCT AACGAGTGCC CTGAGTCTAC GGGCTCAAAC GGTGTACGTT
ACCCAGGATG GAGCCGGTCA GCAAACCGGT GCCGACTGGG CCAATGCCCT GCCCGGTAGC
CAGCTGCAGC CCACCCTCGC TAGTGCTCGT TCAGGTAGTA TTTTCAGAGT GGCGGCCGGG
CTGTACAAAC CCAGTGCCAC GGGCGATCGG ATGGTTTCGT TCAATATTCC AGCCAGAGTA
GCCCTCTTTG GAGGCTATGC CGGTACTGGG CCTAACCCCG ACAGCCGGGT TAACTTCGCC
ATCGTTGGGC AACCCAGTAG CACCACCTTG TCGGGAGACA TTGATAACGA CAACACCCTC
GACGCGGAAA ACGCCAACAA CGTGGTCATG TTCTATAATG TCGGCGAAGG AGGAGGTACG
CAATTGGATG GAGTCGTTAT TACGGGCGGT TATGCCACTA CCCGAAAGTA TACCGGAACG
ACAGCCGCCG GAGGAGGGGG TATCCTGAAT TATGGGGACT TCTTCAATGA TAACAATGGC
GTCAGCAGCC CCTTGATTCA GAATTGCCTG ATTACGTTTA ATTACGCCCC CAGCCGGGGA
GGAGGTATAT TGAATGATGG CGTTAACGGC CGGACTAACC CGTTTATACA AAACTGTGAC
TTCATTCGTA ACACAGCCGG CGAGGGTGGG GCAATCTGCA ACGCCGGTGA ACTGCACCAA
TCGTATCCGG TGATCTCGAA CTGTCGATTT CTCAATAACA ACGCCGGGAA TGGGGCTGCC
ATTCACAATT ATGCCCGGGG TGCTTATTCT CCGTTCAGTC GGACCATTGC CACTGCCAGC
CCGCGGATTT TTAACTGTAT TTTTTCCGGC AATAGTGCTT CCAGCACAGG CGGGGTCATG
TATACGTATG CAACAGGAAT TGGCAGCACC AGAGCCAACC CTGAGTTGCG AAATTGTACC
CTGAGTAACA ACTCAGCACC GAGGGGAGGG GCCTTCTATA ATGCAGGTTA CCCAGGTGAC
TATGGCAATG GCGCTCCCTA TCAGGTCTTG AGCGGTCCTT ATCTCTATAA CTGTATTCTC
TGGAACAATG GCGGATCAGC GGCTATCTTC AACACGCCGA TATTCGCCTT TACGCCGAGC
ATACTGGGTA AAGGCATTGC CCGACTATTC AATTGCCTGG TTGAACAGGG GGTAAGCAGT
TCGGAACCTA CCGATCCACT GGTACGTGTT ATTACCAGCT CTCCCTTTCG TAGTGAACAA
AGTTTGGAAC CGGGGCCTTG CTCACCGGCC GTTGATGCAG GCACCAACTC GTATTATACC
AATGGCACTG AGGTTGGTCC AACAACCGAC ATAGCCGGTA ATCCCCGAAT TTACCCATCA
GGCGGTATCA TCGACATCGG GGCCTATGAG TTCCAGGGCA CACCCGCCAC TCTCCTGGCC
ATTACCCAGC AACCCGCCAG CCAATCCAGC GTGGTAGCCG GGGCCACCGT CGAGACGACT
GTGGGCCTTA ATGCAACTGC TGACAGCTAT GCCTGGTACA AAGATGGTCT TATCGTAATG
GGTCAGACCT CCGCTACGCT CCGGCTCACC AATGTGCAAC TCGCGCAGGC CGGTTCGTAT
TCGCTGGTGG CCACCAGCGC CTGTAACAGC GTTACCTCTA CCGCGTTTAG TTTATCGGTA
ACCCAGCCCG TCGCTCAGCC GCCGGTGGTA AGCGCAACTG TCAGCCAGAG TGCCTTGTGT
GTGGGAAGCC CGACCGGTCT GACGGCTCAG GTCAGTGGCG GCACCGCTCC CTATACCTAC
AGCTGGACCA CCTCCGCCGG AAACCTGGAT AATCAGCTCG ACAATACCAT CCGGTTCAGC
GCCACGACCC CGGGGAGTGT ACTCATCAAT CTTCTGGTCA CCGATGCCAA CAGCCTGACG
GCTACGGCCA GCGTGTCACT ATTGGTTAAT GCCAAACCAG TCGTATCCAT CAATGGGCTG
GCCAGCACCT ATTCCCAAAC GGACCCCGCC CTAACGCTGG CCGGAGTAGG CACACCCACC
GGGGGAGCAT TTACCATCGA CGGTAACACG GCTACGGTTC TCAATCCGGC CTCTCTGACG
CTGGGCAATC ACTCGGTCAG CTATGCCTTT ACCGATGCCA GCGGCTGTAG TGGCGCGGCT
AGCCAGTCGG TTACTATCGT GGCTAATCCG TCTGTCGCCA GCCTTACCCA CTTCTGGCTC
ATCAATGCCG ACAATAACCA GCGTATTCGC GAGCTGACCA ATGGCCAACA GATCGATCTG
TCCACACTTC CCAGTCGTCG GATTGCTATT CAGGCTACCA CCGAACCTGC CACTGTGGGC
TCCGTGGTCT TTCAACTCAG CGGTCAGGAG ACACGTCGGC AAGTGGAAAC TCTGGCCCCG
TATGCGTTAT TCGGCGACGA CAACAAGGGC AATTACCTGC CCTGGACCCC GACCGCCGGA
AACTACCGCC TGACGGCAAC CCCTTATTCG GAGTCGGGTG GCATAGGAAA TGCGGGTACC
GCTTTGACAG TGTCGTTCAC GGTAGTCGAA CCGGTTAATC CCCAACGGCT GGCTCATTTA
TGGCTTATTA ATGCCGATAC CGATCAGCCC ATTCAGGAGC TGACCAATGG CCTGCAACTA
GACCTCTCTA AACTGCCCAC CAGGAATCTG GCGGTTCAGG CTGTTACCGA ACCCACGGCG
GTCGGTTCGG TCGTGTTCGC CCTGAGTGGA CAGCAGAGCC ACCAACAAGT GGAGACGCTG
GCTCCCTATG CGCTGTTTGG CGACAACCAG GGGCACTATT ACAGCTGGAC ACCACCCCTT
GGCAACTATA AACTCACGGC TACCCCGTAT TCGGGAGCGG GGGGCACGGG TAGTGTGGGT
ACGGCGCTGA GCGTCTCCTT TACCGTGATC GAATCCGCCA CACCGGTTGC CGGGCGGCTG
GCTCATCTGT GGCTCCTCAA TGCCGATACC GATCAGCCCA TTCAGGAGCT GACCAATGGT
CAGCAACTGG ACCTTTCTAA ACTGCCCACT AAGAATCTGG CTATTCAGGC CCTCACCGAA
CCCACGGCGG TCGGCTCGGT GGTCTTTGCG CTGAGCGGCC GACAGAGTCG TCAGCAGGTG
GAGACGCTGG CACCTTATGC GCTGTTTGGT GATGATCAGG GTAACTTTCT GGGCTGGACG
CCCGCTCTGG GAACCTACAC ACTAACGGCC ACACCCTATT CAAGTGTGGG GGGGACGGGT
GTTGCGGGTA CTCCGCTGAC AGTGTCCTTT ACGGTGATCA ATCCGGCAGC GGCCCGACTG
GCGGTCGGGC GCGTGGAGAC ATCTATAGAC GATAACTGGC AGGTACGGGT GCTGGGTAAC
CCGGTAGTGG GTAGTGAGGT AGTGATAGAC GTGAGCGGGG CGCAGGGTCA GTCGCTTGTC
TACACACTCA CCGATGCAGT CGGGAAGTTG ATTGACACCC GGCAGGTAGC CCAGCCGAAT
GCTGTAGAGC GACAGACGCT GAGTACGGGT AGCCAGGGGG CAGGCCTCCT GCTGCTACAG
ATCAGCACGC CTGCCCGGCG TCAGACGGTG AAAGTGCTGA AAGCAAACTA A
|
|---|
| Protein sequence | MKNKFTCFFI KPPAYLPGLL LGVALLLTSA LSLRAQTVYV TQDGAGQQTG ADWANALPGS
QLQPTLASAR SGSIFRVAAG LYKPSATGDR MVSFNIPARV ALFGGYAGTG PNPDSRVNFA
IVGQPSSTTL SGDIDNDNTL DAENANNVVM FYNVGEGGGT QLDGVVITGG YATTRKYTGT
TAAGGGGILN YGDFFNDNNG VSSPLIQNCL ITFNYAPSRG GGILNDGVNG RTNPFIQNCD
FIRNTAGEGG AICNAGELHQ SYPVISNCRF LNNNAGNGAA IHNYARGAYS PFSRTIATAS
PRIFNCIFSG NSASSTGGVM YTYATGIGST RANPELRNCT LSNNSAPRGG AFYNAGYPGD
YGNGAPYQVL SGPYLYNCIL WNNGGSAAIF NTPIFAFTPS ILGKGIARLF NCLVEQGVSS
SEPTDPLVRV ITSSPFRSEQ SLEPGPCSPA VDAGTNSYYT NGTEVGPTTD IAGNPRIYPS
GGIIDIGAYE FQGTPATLLA ITQQPASQSS VVAGATVETT VGLNATADSY AWYKDGLIVM
GQTSATLRLT NVQLAQAGSY SLVATSACNS VTSTAFSLSV TQPVAQPPVV SATVSQSALC
VGSPTGLTAQ VSGGTAPYTY SWTTSAGNLD NQLDNTIRFS ATTPGSVLIN LLVTDANSLT
ATASVSLLVN AKPVVSINGL ASTYSQTDPA LTLAGVGTPT GGAFTIDGNT ATVLNPASLT
LGNHSVSYAF TDASGCSGAA SQSVTIVANP SVASLTHFWL INADNNQRIR ELTNGQQIDL
STLPSRRIAI QATTEPATVG SVVFQLSGQE TRRQVETLAP YALFGDDNKG NYLPWTPTAG
NYRLTATPYS ESGGIGNAGT ALTVSFTVVE PVNPQRLAHL WLINADTDQP IQELTNGLQL
DLSKLPTRNL AVQAVTEPTA VGSVVFALSG QQSHQQVETL APYALFGDNQ GHYYSWTPPL
GNYKLTATPY SGAGGTGSVG TALSVSFTVI ESATPVAGRL AHLWLLNADT DQPIQELTNG
QQLDLSKLPT KNLAIQALTE PTAVGSVVFA LSGRQSRQQV ETLAPYALFG DDQGNFLGWT
PALGTYTLTA TPYSSVGGTG VAGTPLTVSF TVINPAAARL AVGRVETSID DNWQVRVLGN
PVVGSEVVID VSGAQGQSLV YTLTDAVGKL IDTRQVAQPN AVERQTLSTG SQGAGLLLLQ
ISTPARRQTV KVLKAN
|
|---|
| |