| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1346 |
|---|
| Symbol | |
|---|
| ID | 8708846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1610264 |
|---|
| End bp | 1611259 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646483431 |
|---|
| Product | RNA methyltransferase, TrmH family, group 3 |
|---|
| Protein accession | YP_003374528 |
|---|
| Protein GI | 283783774 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00762958 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTACGA AAAAAGGGCC GACCAAGGGG TCGGGTGGAA AACATCGCAA TGCTTTGCGC
GGAAAAGGTC CTACTCCGAA GGCTGAAGAT CGCGTGTATC ACAAAGCTTA TTTTGCTAAG
AAAGCTGCTA TTAAGCGCAC ATTTGCAGAT CCGCGTTTGG CTGCGCGCCG CAGAGTGGAT
AAGCTTGGTA GCGATTCAGA TGAGTTGGTA ATTGGTCGCA ATGCTGCTTT AGAGGCGTTA
AGAGTTGGAG TTCCAAGCAC TCAATTGTAT GTGGCTAATC GCATTGAGCA TGACGATCGC
ACGCGCGAAA TCGTGAAGTT AGCAGGCATG CAGGGTTTGC GTTTGCTTGA AGCGGATCGC
CTTGAAATGG ATCGTATTGC GCATAGTACG AATCATCAGG GCATTATTGT GAAAGTTCAG
CCTTACCAGT ATCACTCTTT GCAAGAATTG GTTGAACGAG CGGAAAAGAA GGCGCGCGCA
ATGGAAGCTG CTGATTCAGA TTCTGCTCGC ATTAATGCTC GACCATTGTT TATTGCTTTG
GATGGCGTTA CGGATCCTCA AAATTTGGGT GCTGTTATTC GTTCTGCAGC AGCTTTCGGT
GCTAATGGTG TGATTTTGCC TGAGCGCAGA AGTGCTTCCG TAACTGCTGC TGCTTGGAAG
GTTTCTGCTG GTGCTGCAGC TCATTTGCCA GTTGCTAGAG TTGTTAATTT AAATAAGGCA
ATTCAAGGTT TGCGAGAGCG CGGATGGTAT GCAATTGGTC TTGATGGCGG CGGCGATAAG
CTTGTTGGAG AAACTGGCTT TGAAACTGAT CCGTTAGTTG TTGTGCTCGG CTCTGAAGGT
AAGGGCATGA GTCGCCTTAC GAGAGAAGCG TGCGATGCTA TTGCTGGAAT CCCAATTTCT
AGCGCGGTTG AATCTCTTAA CGCTTCTGTT GCAGCAGGCA TCAGTTTATA CGCTGTTGCT
AACGCTCGTC GTTTGGCTGC ATTGAATCAA AACTGA
|
|---|
| Protein sequence | MTTKKGPTKG SGGKHRNALR GKGPTPKAED RVYHKAYFAK KAAIKRTFAD PRLAARRRVD
KLGSDSDELV IGRNAALEAL RVGVPSTQLY VANRIEHDDR TREIVKLAGM QGLRLLEADR
LEMDRIAHST NHQGIIVKVQ PYQYHSLQEL VERAEKKARA MEAADSDSAR INARPLFIAL
DGVTDPQNLG AVIRSAAAFG ANGVILPERR SASVTAAAWK VSAGAAAHLP VARVVNLNKA
IQGLRERGWY AIGLDGGGDK LVGETGFETD PLVVVLGSEG KGMSRLTREA CDAIAGIPIS
SAVESLNASV AAGISLYAVA NARRLAALNQ N
|
|---|
| |