| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1304 |
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| Symbol | |
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| ID | 8709405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1559146 |
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| End bp | 1560159 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483391 |
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| Product | periplasmic binding protein and sugar binding domain of the LacI family protein |
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| Protein accession | YP_003374492 |
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| Protein GI | 283783738 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCAA ATATTCAAGA TGTAGCGAAT AAAGCTCATG TGTCAGTTTC TACTGTGTCG
CGTTCATTTA CACGACCAAA CTTAGTATCT GCATCCACTC GCAATAAAGT ATTGGCCATT
GCTGAACAAT TGAATTTTTC TATTTCGAAA TCTGCAGCAG CACTAAAATC TGGTAAAACC
TTGCGCATCG CTTTATTGAT TAGCGATCAA ATTCGTCTAT GGTTTTCTGC ATCTATTATT
CAAGGATTGA ATCAAGTATT CCACACAGCT GGATACGATT TGTCAATTTT TCAGATTTCC
AGCAGCAAAG AGCGTAGCGA ATTTTTCACA ATGCTCCCAA CTAGACGTAA TGCTGACGCT
GTTGTTGTGT GCTCCTTTGA CGTAAATACC GACGAAATCG CACAACTTAA ATCAACAGGT
GTACCAATTG TTGGCATAAA CTGCTTATAT CCACAAAAAT GCGATTTTGA CGCGACTATC
AATATTGACG ATGACCAAGG TGCAAGACTT ATGGCACGCC ACTTAATCGG TTTAGGGCAT
CGCAATATTG CATATGTGCG CACAACTCGT GACGTTTCAC TACATTTCAG CGTATTGCAG
CGTTACCATT CTTTTATTGA TGAATGCCAA AATAGCGGGA TCACACCTAC AGAAATTGTG
GCACCTGCTA ATTCTGATCG CATAAGCGCC ATAGTTTCTA TGCTTCTTGG AAGTTCAATT
ATGCCAACAG CAATTGCATG CCAAGAAGAT GGTATTGCAA TACCGCTTAT GTTTCAGCTT
GCACGCAGCG GGTATTCTAC TCCAAAAGAT GTGTCAATTA TTGGTTTTGA CGATAGTTTT
TACGCGCATG AAACTGGCTT AACTACTATT AGACAGGATC CAGTTGATAT TGCTTCTACT
GCGGCAAATA TCACGCTTGC GCTTATAAAC GCAGAGGAAG TTGAAGATCC ATATCGCATT
GTTCCAGCGC AACTTATTGT GCGTTCAAGC ACAGCTGCAT TATTAAAAGA GTAG
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| Protein sequence | MSANIQDVAN KAHVSVSTVS RSFTRPNLVS ASTRNKVLAI AEQLNFSISK SAAALKSGKT
LRIALLISDQ IRLWFSASII QGLNQVFHTA GYDLSIFQIS SSKERSEFFT MLPTRRNADA
VVVCSFDVNT DEIAQLKSTG VPIVGINCLY PQKCDFDATI NIDDDQGARL MARHLIGLGH
RNIAYVRTTR DVSLHFSVLQ RYHSFIDECQ NSGITPTEIV APANSDRISA IVSMLLGSSI
MPTAIACQED GIAIPLMFQL ARSGYSTPKD VSIIGFDDSF YAHETGLTTI RQDPVDIAST
AANITLALIN AEEVEDPYRI VPAQLIVRSS TAALLKE
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