| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1296 |
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| Symbol | |
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| ID | 8708784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1548724 |
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| End bp | 1550130 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483383 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374484 |
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| Protein GI | 283783730 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGCA CGACATCCAC AAAGCGAGAA AGACGCCAGA AGAAGACGTC AACTGCAGAA
CGCTTTGCTC CTTCACCTTA TTCACTGAAA GAGGCTGCAA AACATGCGGA CATTCTTTCA
TGGATTTCTG TTGTCATATT TGGCTTTGGC AATTTTGTCC GCAAGCAATA CATCAAAGGC
GTTATATTCT TAGCGTGCGA AGCAACTTTA TTCGTATTCT TATTTACAAT TGGATTGGAT
TATCTTCCAA AAATCAACAC TCTTGGCACA GTAGAACAGG GCAGAGTTAA AGTCAACGGA
TTCTGGCGAT ACAGTGCAGG CGATAATTCT GTAGAAATTT TACTGTATGG AGTTATGTCG
ATATTAGCGA TTGTATTGCT TGTATATCTG GCAACTCTCG CTCTTCGCAG CGCGTACAAA
GCGCAATCTG TAATGGCAGA CGGCAAGAAG CCACTTAATT TCATTGATGA TGCTAAGACT
CTTCTTGACG AAAAAGCACA CGTCGGTTTT ATGACTCTTC CAACTGCTGG CATTGTGTTA
TTCACAATTT TGCCATTGTT CTTCATGATT TCTATGGCTT TCACAAGCTA TGACGAGAAT
CATCAACAAA AATTCAGCTG GATTGGGTTA GACGTTTTTT CTCAATTCTT AACCGGAAAA
AGTGATTTAA TTAAAGCTGA CGTATTCTTT GACGTATTAA TCTGGACTCT TGTTTGGGCA
TTCCTTGCAA CCTTCCTGAA CTTCTTCCTC GGCATGTTCA TTGCAATGAT AATCAATAGA
AAGTCCACTC GTCTTAAGGG ATTGTGGCGA ACTTGCTTCT CCCTTACAAT TGCAGTTCCA
CAGTTTGTTT CATTGCTTAT TATGAACAAT ATGCTTAGCC AGAACGGTGT TATTAACATT
GTCTTTAAGC AAAACGGTTG GATACATCAG GAACTTCCTT TCCTTACGGA TGTAACTTGG
GCTCGAGTGA CGGTAATTCT TATCAATCTT TGGGTTGGTA TTCCATTCAC CATCATGCAG
ATTACAGGTA TCTTGCAAAA CGTTCCTGCA GAACTTTACG AAGCTGCAGA GCTCGATGGC
GCAGGTTGGT GGCAACGTTT CATGAACGTC ACAATGCCGT ACATCATCTT TGTTATGACT
CCATATTTGA TTACTACCTT TACTGGCAAC ATCAATAACT TCAACGTTAT TTACCTCTTA
ACAAAAGGTG GTCCAGCAAG TAGCAAAGTC AACAGTGCAG GCGGCACCGA CTTGCTTATC
ACATGGCTCT ACAAGTTGAC TGTTGACCAG CAAAACTACA ACGCAGGTGC AGTAATTGGT
ATTTTGACAT TCATGGTGCT TGCTGTCGTA GCACTGATTA CGTATCGCAA CTCTGGATCT
TACAAGAATG AGGAGGGATT CCGGTGA
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| Protein sequence | MTGTTSTKRE RRQKKTSTAE RFAPSPYSLK EAAKHADILS WISVVIFGFG NFVRKQYIKG
VIFLACEATL FVFLFTIGLD YLPKINTLGT VEQGRVKVNG FWRYSAGDNS VEILLYGVMS
ILAIVLLVYL ATLALRSAYK AQSVMADGKK PLNFIDDAKT LLDEKAHVGF MTLPTAGIVL
FTILPLFFMI SMAFTSYDEN HQQKFSWIGL DVFSQFLTGK SDLIKADVFF DVLIWTLVWA
FLATFLNFFL GMFIAMIINR KSTRLKGLWR TCFSLTIAVP QFVSLLIMNN MLSQNGVINI
VFKQNGWIHQ ELPFLTDVTW ARVTVILINL WVGIPFTIMQ ITGILQNVPA ELYEAAELDG
AGWWQRFMNV TMPYIIFVMT PYLITTFTGN INNFNVIYLL TKGGPASSKV NSAGGTDLLI
TWLYKLTVDQ QNYNAGAVIG ILTFMVLAVV ALITYRNSGS YKNEEGFR
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