| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1292 |
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| Symbol | |
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| ID | 8709340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1543292 |
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| End bp | 1544317 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483379 |
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| Product | transcriptional regulator, LacI family |
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| Protein accession | YP_003374480 |
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| Protein GI | 283783726 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAA ACAGTATTAG CGATGTAGCT ACGCTAGCAG GAGTTTCCAT AGCCACTGTC
TCTAGAACTT TTGCCCACCC AGACAAAGTA ACGCCAGCAA CACGAGCAAA AGTTAGGCAA
GCAGCAGAAC AACTCGACTT TACCGTATCA AGAACCGCAG GATTACTGAA ATCAGGTAAA
TCATACCGCA TAGCACTACT CATTGGTAGC AGTCGCATAG AATGGTTTAG CGCTTCTATT
ATTGAAGGAT TAAACGCTAC GTTGCACGCA GCCGGATACG ATCTAGTAAT TTATTCAGTA
GATGGTATCG AACAGCGTAA AACTTTCTTC AAAGAACTAC CTTTACGCGG TAATACTGAT
GCCGTAATCG TATCTTCTTT CGATATCAGC AACAATGAGG CAGAGCAGCT TCAACGCATA
AAAGTACCTA TTGTGGGCAT TAATTGTGTA GCGTCTAAAA TTCTTTCTGC AGCAATCAGC
ATTGACGATG CTGCAGGAAT TAAACTTGCA GTGCGCCATC TTACTACTTT AGGACACAAA
AAAATACTGT ATGTTTACGA ACATTTTAAG TCACCACTTC GCTTCAGCTC TTCAAGGCGA
ATCACCAGCT TTGAAACAAT ATGCAACGAT ACACCCGGAG TCCAAGGGAA AATCTTACCA
ATTGACTTTG GAGACAACCC CTTAGATGCC ACTATTTCAG AACTATTTTC AAGCAGCAAC
CCTCCTACTG CACTGTGCTT TCACCAAGAT TCCACAGCTA TACCATTCCT GTTTCGTTTA
CAAAAACTAG GCATACGAGT GCCAGAAGAT TTGTCTATTA TTGGTTTTGA CAATAGTACT
TTTGCAGAAG CATTAGGCTT AACTACCATT CGACAAAATC CATGTCTGAT GGCTCAGCAA
GCCGCAAATA TTGCTTTAGC ACTTATTAAC GAGCAGCCAA TCACAAGACG CCATATTACA
GCTCCGCTTC AGCTTCTAAT CCGAAACTCA ACTGGTCCTG CCCCAGACAT TACATCTGCA
AACTGA
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| Protein sequence | MSKNSISDVA TLAGVSIATV SRTFAHPDKV TPATRAKVRQ AAEQLDFTVS RTAGLLKSGK
SYRIALLIGS SRIEWFSASI IEGLNATLHA AGYDLVIYSV DGIEQRKTFF KELPLRGNTD
AVIVSSFDIS NNEAEQLQRI KVPIVGINCV ASKILSAAIS IDDAAGIKLA VRHLTTLGHK
KILYVYEHFK SPLRFSSSRR ITSFETICND TPGVQGKILP IDFGDNPLDA TISELFSSSN
PPTALCFHQD STAIPFLFRL QKLGIRVPED LSIIGFDNST FAEALGLTTI RQNPCLMAQQ
AANIALALIN EQPITRRHIT APLQLLIRNS TGPAPDITSA N
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