| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1271 |
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| Symbol | |
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| ID | 8708929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1517552 |
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| End bp | 1518730 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483359 |
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| Product | DNA polymerase III, delta' subunit family protein |
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| Protein accession | YP_003374461 |
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| Protein GI | 283783707 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.130889 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTGT GGGATAGCGT TATTGGGCAA GAACAGGTAG TTTCGCGATT GCGAAACATT
GCTTGTGCGG ACGCTAGCAA AATAGCGCAA TCTTGGCTGA TTTGCGGATC TGCTGGCTTC
GGTAGTGCGC AAGTTGCGCG CGCTTTCGCT GCAGCTCTCG AAAGTCCGGA TCATGGAGAA
GGCAGTGATG GAATTAGTGG CGAAGGTGAG CTTAGTAAAA CTACCAAAGA AGTTTTAGCA
GGATCGCATC CTGATGTGCA TACGCTTGCA ACAAAAGGCG TAACTCTTAG CATTGACGAT
GTGCGTGAGG CAATTGGGAT TTCTGAGCAG ATGCCTAGCA CTGCTCCTTG GCGAATCATA
ATTATTGAAG ATGTTGACCG AATGTTGGAA CGTAGCACGA ACGTTCTTCT TAAAGAGATT
GAAGAGCCAA GTGAGCATAC GATTTGGCTT TTATGCGCTT CAAGTGTTAT GGATGTGCTT
CCAACAATTC GTTCGCGTAC ACAACTTGTG CAATTAGCTA CTCCAAACGA GCAGTCTATA
GCAGAATATC TTACTAAAAA AACGGATGCG GATAATAAGC TAGCGAGTCG TGCAGCCAGG
CTTTCTCAAG GAAATATAGC AACTGCTTTT ATTTACGCAA GCGATGAGCG TGCTTTAAGT
AGGCGAGATG AGCTTGTTGC AGGATTGCTT CGTATGCATG ATGCTGCCGA CGCAATTATG
CTTGCTGCAA TGCTTATTGA CGATGCAAAA GCACAAGCAG AAGATGAGGT TCAGCGAAAT
GTTGAGGATC AACAAAAAGA ATTTCGCAGA ATTAACGGAT TAGGCGATGA GGATCGCATT
CCGCCCAAAT TGCGCGCAAA CTACAATGCA ATTGGAAAAA AGGATGATGT AAAACGTAAA
GTAACTCGTG TAAGCCGTGA CGTGTTATGC CGTTCTCTTG ACGCAATCGA TAGCGTGTAT
AGAGACGTTT TAGTTGTTAT TAACGACGCG CAAAAGTCTT CGCCAATTAT AAATCAGGAA
TACAAGTCTA GAATTGTCCA GTTGGCACAA AGCATGACAG CAAGTAGTGC CTTGGATTGC
GTTGACAGTA TTGCTACTGC TCGTCGTCGG CTTTCGAGAA ATGGTAACGC AACTCTTGTT
TTTGAAGCGC TATTTTGCTC ACTTTTGCAA AGTCAATAA
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| Protein sequence | MSVWDSVIGQ EQVVSRLRNI ACADASKIAQ SWLICGSAGF GSAQVARAFA AALESPDHGE
GSDGISGEGE LSKTTKEVLA GSHPDVHTLA TKGVTLSIDD VREAIGISEQ MPSTAPWRII
IIEDVDRMLE RSTNVLLKEI EEPSEHTIWL LCASSVMDVL PTIRSRTQLV QLATPNEQSI
AEYLTKKTDA DNKLASRAAR LSQGNIATAF IYASDERALS RRDELVAGLL RMHDAADAIM
LAAMLIDDAK AQAEDEVQRN VEDQQKEFRR INGLGDEDRI PPKLRANYNA IGKKDDVKRK
VTRVSRDVLC RSLDAIDSVY RDVLVVINDA QKSSPIINQE YKSRIVQLAQ SMTASSALDC
VDSIATARRR LSRNGNATLV FEALFCSLLQ SQ
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