| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1255 |
|---|
| Symbol | |
|---|
| ID | 8709950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 1500477 |
|---|
| End bp | 1501919 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646483343 |
|---|
| Product | peptidase C1-like protein |
|---|
| Protein accession | YP_003374445 |
|---|
| Protein GI | 283783691 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3579] Aminopeptidase C |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000154522 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAA ACATCAAAGC CGTAACTCTG GAACATGTAA AAAATTATTC CAAACATTTT
AACGAACAGC GCGCAAATCT TCTCGCCGCG AATGCAGCAG TAACAAATGG TGTGCTTAAA
GCCGCAACAA GCTACCAAGG CAAGCGTGCT CTTCCTCGCG AATTCTCAAT AGAATTAAAA
CAAGGCAGCA TTACCAATCA GAAGCGCTCC GGACGCTGCT GGATGTTCGC CTCACTTAAT
ACTTTGCGAT ACGAAGTAAT GCATAAGTGG AATTTAGACG ACTTTGAGTT TTCAGAAAGC
TACCTATTCT TCTGGGACAA GATTGAAAAA GCAAACGCTT ATTTGGAAAA TGTGCTTTCA
ACACTTGATG AAGATGTTAA TAGCCGACTT TTTGAGAGCA TTAACTATGG TCCAATCGAT
GACGGCGGCT GGTGGCAAAT GTTCGTCAAC TTGGTAAACA AGTACGGACT TGTGCCAAAG
AGTGCATATC CAGATTCACA GAACTCAGTC GACTCTGATG CATTCGTACA GTACATCAAT
ACCAAGTTGC GCGAGTTTGC ATACGAATTG CGTGAAGCTC ATAAGAACGG AACTTCTTTG
GAAGAATTGC GCGAAATGAA AGTTCGCGAT TTGGAAACCG TTTATCGCAT GACAACTATT
GCCCTGGGTG AACCACCTGC ACAGTTTGAC TTCTTCGCAC GAACTAAAGA TGATGATGAC
GATAAGAAGG ACGGCGAAAA AGACGAAACC AAGAAAGATG GCGAGAAAAC CGGCAAAGAT
AACAAGCCAA AAACCGGCAA AGATGAGCGT CCAATGATTT GTGAATACGG AATTACTCCA
CTTGAGTTCG CAAAGAAGTA CGTCCCAGTT GACGTAAACG ACTTCGTAAC AATATGCAAT
GCACCTATGG AACGCACACC ATTCAACAAG CTCTACCAAT TCAAGTACAG CACCAACGTA
GCTGAAACAA AGGAAATGGA ATTTGTTAAT GTGCCTCTCG ATGTATTCAA AAAAGCAGCT
GTAGACCAAT TAAAAGATGG TCATCCAATC TGGTTTGCAT GCGATTGCAC ACAGTTCTCC
TTGCGTGACA GTGGATTCTT CGATCCTGCA GTTGTGCGCG TAGATGAATT GTTTGATGTG
AAGTTTACAT TCGATAAAGC TCACGGTTTG GAATATATGG ATTGCCCAGG AAATCACGCA
ATGACATTCA CTGGCGTAAA TCTTAATAAA GATGGCGATC CAGATCGCTG GAAGATCGAG
AACAGCTGGG GCAAGGATGC TGGCGAAGAC GGCTATTATG TTGGCTCAGC AGAGTGGTTC
GATCGTTATG TGAACGAAAT AATCATCAAC AAAAAGTACC TTGACAAAGA AACTTTAGCT
GTATTGGATC AAGAACCAGT AATGCTTGAA CCATGGGCGC CACTTTCGAA GCGTTGCCGT
TAA
|
|---|
| Protein sequence | MAENIKAVTL EHVKNYSKHF NEQRANLLAA NAAVTNGVLK AATSYQGKRA LPREFSIELK
QGSITNQKRS GRCWMFASLN TLRYEVMHKW NLDDFEFSES YLFFWDKIEK ANAYLENVLS
TLDEDVNSRL FESINYGPID DGGWWQMFVN LVNKYGLVPK SAYPDSQNSV DSDAFVQYIN
TKLREFAYEL REAHKNGTSL EELREMKVRD LETVYRMTTI ALGEPPAQFD FFARTKDDDD
DKKDGEKDET KKDGEKTGKD NKPKTGKDER PMICEYGITP LEFAKKYVPV DVNDFVTICN
APMERTPFNK LYQFKYSTNV AETKEMEFVN VPLDVFKKAA VDQLKDGHPI WFACDCTQFS
LRDSGFFDPA VVRVDELFDV KFTFDKAHGL EYMDCPGNHA MTFTGVNLNK DGDPDRWKIE
NSWGKDAGED GYYVGSAEWF DRYVNEIIIN KKYLDKETLA VLDQEPVMLE PWAPLSKRCR
|
|---|
| |