| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1254 |
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| Symbol | |
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| ID | 8709096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1498932 |
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| End bp | 1499915 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483342 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374444 |
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| Protein GI | 283783690 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000126232 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATACGAT ACATCGTTAA ACGATGCCTG AATTATGTGG TGATGTTGTT TGTTGCCGTA
TCCATGACGT ATTTCTTGAC AAGTGCTTTT ATGAGACCGC GTTCGAACTA CATGTCTAGG
CATCCGCATC CACCTATTGC ATCAATCAAC CGTTCTTTGG ATTTGGCAAA TATTAACGAC
CAGACTCCAG TGTTTACTCG TTATTGCCGT TGGATTTACA ACATTTTTAC TAAGTGGGAT
TGGGGATTGA GCCCAGATCA GGCTCCAGTT GGTCCGGCAA TTATGTCTCG TATTGGCGCA
TCTGTTCAGC TGGTTACTGG CGCTACAATT CTTGGCATTG TTCTCGGTGT TAGCGTTGGT
GTTTACACTG CTATCCGTCA GTACAAGTGG CAAGATAGAG TTCTTAATTC CACCGCAACC
TTCCTGCTGG TTGTTCCTGC AGCAGTTTTG GGTTTGATGG TTGTGCTTGC TGCTATTAGC
ATTAACCGCG CAACAGGCGT GCGACTTTTC TACGTTACTG GTTTGCACTC TTACCAGGGT
TCTGACCCGT TCATGTTCCT TCTTGACTTC CTTCAGCATT TGATTTTGCC GACGATTGTT
ATGACAATTC CTGGCATGGT TGGGTATCAT TTAACGCAGC GCACGTATCT TCTCGATACT
ATGAATGCTG ATTACGTTCG TACGGCTCGC GCTAAGGGCT TACCTTTGAA TTTGGCTATT
CGCCGCCACG CTTTGCGTAC TTCTTTGATT CCAACAGCTG TTGACGTCGC CTTCTCTATT
GCAGGCGTGT TTACGGGTGC TGTGATTACT GAAACCGTGT TTGCTATTAA CGGTCTTGGT
AGCTACTTCG TTCAGACCAT TATGCAGAAC GATATTAACG GTTCTGTTGC TATTGCAGCG
TTTGGTGCTG TATGTACCTT AGTTGGTGCT CTGCTTGCAG ATATCTTCTC TGCTTGGCTC
GACCCACGTA TTCGTTTGAA CTAG
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| Protein sequence | MIRYIVKRCL NYVVMLFVAV SMTYFLTSAF MRPRSNYMSR HPHPPIASIN RSLDLANIND
QTPVFTRYCR WIYNIFTKWD WGLSPDQAPV GPAIMSRIGA SVQLVTGATI LGIVLGVSVG
VYTAIRQYKW QDRVLNSTAT FLLVVPAAVL GLMVVLAAIS INRATGVRLF YVTGLHSYQG
SDPFMFLLDF LQHLILPTIV MTIPGMVGYH LTQRTYLLDT MNADYVRTAR AKGLPLNLAI
RRHALRTSLI PTAVDVAFSI AGVFTGAVIT ETVFAINGLG SYFVQTIMQN DINGSVAIAA
FGAVCTLVGA LLADIFSAWL DPRIRLN
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