| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1239 |
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| Symbol | |
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| ID | 8708995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1472723 |
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| End bp | 1474897 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483327 |
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| Product | putative ABC transporter-associated repeat protein |
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| Protein accession | YP_003374432 |
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| Protein GI | 283783678 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000659348 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACTCA GTGGAAATAA TGGTGTGACG AAAATGGTTC GTAATAGTAT AAAGAAATTA
TCTCGCGCTT TGTTGGTGGG CGTGTGCTTG TGTGGCATGA TGATGGGAAC TCCCACGGCT
TTTGCTGACA ATGGCAGTGA CGCAACTGTT GTAAGCGGAA AGAAATCTTC TAAAGATTTT
ACTGCCATAA AAAAAGCCAA TTTTGCAGCG TGTACTGCTG CTAGATTAGA TAAAACTGCT
TCACAACCTG CGGCTGATAG TAAAGCTACA ATGTGCCACG CGTATAAAGG TCATACTGAC
GTTTTTGCAA CTTTCTTTGA TGCTACAAGC AAGCGCATGG TATTAGGTAC CTTGGGCGAT
GCGTTTGAAA GTGAAGATCA TAATGGCACT CGGTATGATA CGAATCGACT TATTTTTGAA
GTCGGCTCTA AAAATATCAT GCAGTTTTCC AAAGATGAGA ACGATCCGAT AATAAAAGAA
ATCTACGCAA CAACTCGCGA AGGTGTAGTC TGGTTCTTTG ATCAATCTGG AGCTGGAAAT
ACTGGTGCAT TATGGCCTGG TTTAGATACT AGACCGTTAT ATGAGGGAGC TGGTTCTACA
AAGGTTAATC CGACAGTTAA ATTGTCGCTA ACTGGTATCG AAGCACCTCA CAACGGCGAA
GTTTTTATGT ACATTCGCAG CGGTAGCGAT TATGAGAAAA TGCTCGGTTC TGCTGAAAAC
TGGCCGAAAG ATGTTGATAT TACTGAGACT GGCGGAAAGC ATTCGCACAT GTATTGGTCT
TTTAACCGTC CTGGTGTGTA CAAGTTAAAA ATGAAGGCTA CTGCTACCGT TGGTGGCAAT
GAGCAAAGTT CTGAGCAGAC TTATACGTTC CATGTAACTA ATCATGATGT AACAGATGGC
GATTTTGCTG ATTATGATGG CGCATCTTTT GACGGTGACG AAGATGGCGA AGACGACGAA
GAAGATTCAG ATGATGATGA TTCTCAAAGT GATGATCACA GCATTAATGT GCAACAAAGT
AACGGATCTT TCTTCATTAA CGGTAACAAC AACACTGTGT ATGTGACTCC ATGGTCTGGA
GCAAAAATGC AACAACAAGG ACTTCTTGGA AGTAATAAAG GACTTTTTGG AAGTAATAAT
GGTGGTCTTA TTCATGGGGA ACATAACGCT AAAAGCGGAA AGCAAGTTTC TCAAAGTCAG
CAATCTGCTG TGACAAAGTT CAAAGACATC AAGGGCGACA AGCTTGTTAT AGACCACGGT
CACGTTGATA TCGCTGTATA TACTGGCGAT TCGAATAAAG TTGATATGGC TGTGCAAGAA
GATGTGACAG GAAGCCACGT CTTTAGAGAC ACAGACACAG TTGTATTCGC AGTTGGTGAT
GCTGGTAAAA CTAACGGCGT GTATCGTATA CCGCAAACAC AAATTGATGG TGTGCCATGG
ATGGGTTGGA ATAATCAGTC TATGAATCCG CATAAGCCAA CTCAATTGAG CCTAACGGGA
GTTGAAGGTC CTGGAAACGT ACGCGTTTGG ATGTTCGGCG GCTTGGGCGG TGGAGATCAA
GAGATTTTCT CCACTCAAGG AGCAACAGAT TATACGATAC CTGCAAATAC GCATGCTCAT
GCGAATTGGG ATTTCGACGA ACCGGGATAT TACACATTGC AATTCCAAGC TTCTGACGGA
AATTCTACAG TAACTCGCAA TATTCATGTT GCTGTTGGTG TTGATCCACA AGAAACGCCA
ATGGGGTATG CTAGCGGCCG CGAAGATAAT GTAAAAAAGG ATCCACGAGG CAGAAAAGGT
GATCCTTTTG TACCTTATAA TCCACCAAAA CCTGCTGATT TGTCTCGTTT TGGCGGAAAT
CCTTTTGGTT TAGGATTGAA CAATTCACAC TCTGGAAAAC AATTGCCAAG AAAAGCTAAA
AAGCATAAAG GTCTTGTTTC AAAAATTAGT AACAAGAGGC TCGCTAAAAG TTTGTACCGA
CAGAAATTGA ACGATAATGA CGATGTTGCG AAGTCTGAAG CAAAAGGTGT AACAGGATTA
TTTAAGCGAA ATCCTTTACT TGCTTATTCG CTTCTTGCTG GTGGAATTAT TGCTGTGCTT
GGCGTTTTGG GTGCAGGGAT TTGGTATCTC TACAATCGCG GACTTATTAA CTTCAACTGG
CTGTTGCGCT ATTAG
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| Protein sequence | MALSGNNGVT KMVRNSIKKL SRALLVGVCL CGMMMGTPTA FADNGSDATV VSGKKSSKDF
TAIKKANFAA CTAARLDKTA SQPAADSKAT MCHAYKGHTD VFATFFDATS KRMVLGTLGD
AFESEDHNGT RYDTNRLIFE VGSKNIMQFS KDENDPIIKE IYATTREGVV WFFDQSGAGN
TGALWPGLDT RPLYEGAGST KVNPTVKLSL TGIEAPHNGE VFMYIRSGSD YEKMLGSAEN
WPKDVDITET GGKHSHMYWS FNRPGVYKLK MKATATVGGN EQSSEQTYTF HVTNHDVTDG
DFADYDGASF DGDEDGEDDE EDSDDDDSQS DDHSINVQQS NGSFFINGNN NTVYVTPWSG
AKMQQQGLLG SNKGLFGSNN GGLIHGEHNA KSGKQVSQSQ QSAVTKFKDI KGDKLVIDHG
HVDIAVYTGD SNKVDMAVQE DVTGSHVFRD TDTVVFAVGD AGKTNGVYRI PQTQIDGVPW
MGWNNQSMNP HKPTQLSLTG VEGPGNVRVW MFGGLGGGDQ EIFSTQGATD YTIPANTHAH
ANWDFDEPGY YTLQFQASDG NSTVTRNIHV AVGVDPQETP MGYASGREDN VKKDPRGRKG
DPFVPYNPPK PADLSRFGGN PFGLGLNNSH SGKQLPRKAK KHKGLVSKIS NKRLAKSLYR
QKLNDNDDVA KSEAKGVTGL FKRNPLLAYS LLAGGIIAVL GVLGAGIWYL YNRGLINFNW
LLRY
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