| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1238 |
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| Symbol | |
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| ID | 8709697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1470956 |
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| End bp | 1472671 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646483326 |
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| Product | anchored repeat ABC transporter, substrate-binding protein |
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| Protein accession | YP_003374431 |
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| Protein GI | 283783677 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000243739 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTTTTCTT CGATTGGTGC AATTGCAGTC GTCGCGCTTA TTTTGCCGCT TTCTGCTTGT
GGTAGTGTTA ACGGGAATCG TGCAGGACAT CGCGATGGTC GCATTAATGT AGTTACAACT
ACAGGCGTTT TGCGTGATAT GGTGGCGAAT GTAGCAGGGG ATGCTGCAAA TGTGAGTTCA
ATCGTACCTG ATAATGCAGA TCCGCACTCT TACGAGCCAC GATTGCGTTC AATTCGAGAC
GTTGTGTATG CGGATGTGGC TTTTAGTAAT TACATGATGC TTGAGGAGCA TGGTGTTATT
ACTGCTTTAG ACGCAAATTT GCGAAAAGGC GTGCCAAATG TGCAACTTGC TGAAGAAAGC
GTGAAACATG CGGCGGATAT TATTCCAATG GTCGAAGATG TGTCGTTGGA CACTATTTGG
CTTGGTCTTG CTACAGAACG CCAAACTTCG CAGACGGTTG AGGAAGCTAA AGATGCTAAA
GAGCAACAAA AATCTCAAGA GAAACCTGAT AAGTCGCAGT CTTCTCAGGT TTCTCAATCT
TCGCAATCAA ACGCGCCTTT CACTGTAACG AAAGAAGGAC GCGCTACTGT AATAAAGCCA
AAAGCATACA ACATGAAGCG TTCGGACAGG ATCCGCTTAA CTGCAACTAA AGTAACTGGT
CCTGGTTCGC TTTTCGCTTA CCTTACTGGC ACTTTTGGAA GTGTAGAAAC TTACGTTAAT
TCAGCAAACG GAATTAACGA TGAAGATCAT GTAGATTTGC CTGCGGACGC GCACACGCAT
TTAAGTTGGG CTTTTAGTAA GCCAGGAGAA TACACTCTCG ACTTTCATGC AGATATGCTC
AATGCTCAAA ACGAAAGAGT TGCAAGTTTA GGAAACGCAA CTATGCGTTT TGCTGTTGGC
ATTAACGCGC AGAAATTAGC GAAAAAGCGT GGAGCTAGCG TAGTTTTGAA TCAAGGCCAT
GCAGATTTGG CTTACGATTT AGCTAAACGC GGATTTTTGT ACAGAGTTGA CACTTTGCAA
GAAAAGCGGT CAGTTGCGCC AAAGCGCGTA TACTATGAGC CGCGAGACGT AGTAGTAGAA
GTGCCGACTA ATGCTTTAAA AGAAATTCCA GCTGAACAAG GCTATAGATT CCTTGGATTT
GCAAGGCAGA AAATTTATCA ACTTCCTCAA GCTGTTCTTG GAAAACATGT TCATGGAGAT
ATTGATCCGC ATTTATGGCA GTCAGTGAAA AACGGAATTG CTTATGTGCG CACAATAGCT
GACCGCTTGT GCGAAGTCGA TCCTAAAAAT GCTCGCAAAT ATCGCGCAAA TGCGGATCGA
TATATTAATA AACTTCTCGA CGTAGACGCT TATATGCGTA AAAAAGTTGC GTCAATTCCA
AAAGAGCGTC GCAACTTGGT TACAACGCAT GACGCTTTTG CATACTTAGG TAAAGCTTAT
GGCGTAAATA TTGCGGGATT TGTAACAATC AATCCTTCAA GCGAACCGAG CGTGCAAGAT
AGGCGCAGAC TTTCGCAAAT TTTACGCGAC TTGGAAATCC CTGCAGTGTT TTTGGAGCCG
AATTTGATTT CTCGCTCGTC TGTGCTTAAA GAGCTTGCGT CTGAAGCACA TGTGAAAGTT
TGTCCAATTT ATGGTGACGC TTTCGACGCG AATGTGCGAA CTTACGCGGA TATGATGCGA
GCTAACGCGG ATTCTTTAGC GAAATGTTTG AAGTGA
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| Protein sequence | MFSSIGAIAV VALILPLSAC GSVNGNRAGH RDGRINVVTT TGVLRDMVAN VAGDAANVSS
IVPDNADPHS YEPRLRSIRD VVYADVAFSN YMMLEEHGVI TALDANLRKG VPNVQLAEES
VKHAADIIPM VEDVSLDTIW LGLATERQTS QTVEEAKDAK EQQKSQEKPD KSQSSQVSQS
SQSNAPFTVT KEGRATVIKP KAYNMKRSDR IRLTATKVTG PGSLFAYLTG TFGSVETYVN
SANGINDEDH VDLPADAHTH LSWAFSKPGE YTLDFHADML NAQNERVASL GNATMRFAVG
INAQKLAKKR GASVVLNQGH ADLAYDLAKR GFLYRVDTLQ EKRSVAPKRV YYEPRDVVVE
VPTNALKEIP AEQGYRFLGF ARQKIYQLPQ AVLGKHVHGD IDPHLWQSVK NGIAYVRTIA
DRLCEVDPKN ARKYRANADR YINKLLDVDA YMRKKVASIP KERRNLVTTH DAFAYLGKAY
GVNIAGFVTI NPSSEPSVQD RRRLSQILRD LEIPAVFLEP NLISRSSVLK ELASEAHVKV
CPIYGDAFDA NVRTYADMMR ANADSLAKCL K
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