| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1231 |
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| Symbol | |
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| ID | 8708802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1463516 |
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| End bp | 1464886 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483319 |
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| Product | homoserine dehydrogenase |
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| Protein accession | YP_003374424 |
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| Protein GI | 283783670 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0460] Homoserine dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000217271 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAGCA ATCAGTCGAC TAAAACTATT CGCGTAGGCC TACTTGGGGC TGGAACTGTT
GGGTCTCAAA CAGCGCGACT AATAGTTGAA CAGTTCAATG AGCTTAAGAA GCGAACTGGC
GCTGAAATTG AGCTTGCAGC AGTTGCATGC TTACGCCCGG AAGAAGTTGA CGCTCCTTGG
ATTAAGCGTG ATTTGCTAAC TACAGACACT GCCTCTTTGT GCGCTCGCGA AGACATTGAT
ATTATAGTCG AGCTTATTGG CGGACTTGAG CCGGCTCATA CTTTTGTAAA AAGTGCGCTA
TGCCACGGAA AATCTGTTGT TACTGCAAAT AAAGCGTTGC TTGCGAAGTT TGGTCCGGAA
TTATACGAGT GTGCAGAAAG TCACGGAGTT GACTTGTACT TTGAGGCGGC TGTAGCGGGA
GCGATTCCTA TTGTTCGACC GCTTCGAGAG TCGCTTATTG GTGACAAAAT TACGCAAATT
TTCGGAATTG TAAACGGAAC TACCAACTAT ATTCTTGACG AAATGACTGT GCGCGGACTT
GATTTTGATT TGGTTTTGCA CGCGGCTCAA GAAAAGGGTT ATGCTGAGGC AGATCCGACC
GGAGATGTTG AAGGTTTCGA TGCTGCAAAT AAAGCTGCGA TTCTTGCAAC TCTTGCATTC
CAAATGCCAG TAAGTATTGA CGATGTATCC GTTGAAGGAA TTAGCGCGAT TACTGCTGAA
GATATTGCTG CAGCGAGCGC GGAAAAGCGT GTAATTAAGC TACTTGCAGC AGTCGAAAGG
CATTGCGATG GTAAGTCAAA ATCGGATGGC GGAGTAAGTG TTAATGTGTA TCCGGCGCTT
GTTGGTGCGG AGCACCCTTT GGCGTCGGTT CACGGCAGTT TTAATGCTGT GTTTGTGAAG
GCGCAGGCTG CGGACGATTT GATGTTCTAC GGACGCGGTG CCGGCGGTGC TCCAACTGCA
AGTGCTGTTG TTGGAGATGT TGTTAGTGCT GCTCGAAATC TTGTGCGTGG ATGCGCAGGT
TTTGGCGTGC CAATGTATAA CAAGTATGTG CCGGCTTCTA GCGAGCAGAC TAGAGCGGAT
TTTGTGATTC GTTGCAATAT GGAAGATACT TCTTTGGCTT TGTGCAGCGA AGTTATGGAT
GTTTTTGTAG ATTATGGCGT TGCAGCTGAA CGTTTGGCTT CGGCGTGCCA AGCTAAGTAT
GCGCAAACTG AAGCTGATTC GGATTGCCCA CAGTGCGGTC TTGGTGGACC TGGCAGTGTG
CGCGTGCTTG TGCGCGAATG TTCGGAAGCT GCAGTTCAAG CTATTTGTGA GGATTTGCAG
AAGTTGGATG TTGTGTGTGG AAAGCCGCTA GTTTTGCGCG TTATAAAGTA G
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| Protein sequence | MQSNQSTKTI RVGLLGAGTV GSQTARLIVE QFNELKKRTG AEIELAAVAC LRPEEVDAPW
IKRDLLTTDT ASLCAREDID IIVELIGGLE PAHTFVKSAL CHGKSVVTAN KALLAKFGPE
LYECAESHGV DLYFEAAVAG AIPIVRPLRE SLIGDKITQI FGIVNGTTNY ILDEMTVRGL
DFDLVLHAAQ EKGYAEADPT GDVEGFDAAN KAAILATLAF QMPVSIDDVS VEGISAITAE
DIAAASAEKR VIKLLAAVER HCDGKSKSDG GVSVNVYPAL VGAEHPLASV HGSFNAVFVK
AQAADDLMFY GRGAGGAPTA SAVVGDVVSA ARNLVRGCAG FGVPMYNKYV PASSEQTRAD
FVIRCNMEDT SLALCSEVMD VFVDYGVAAE RLASACQAKY AQTEADSDCP QCGLGGPGSV
RVLVRECSEA AVQAICEDLQ KLDVVCGKPL VLRVIK
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