| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1190 |
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| Symbol | |
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| ID | 8708782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1399328 |
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| End bp | 1401316 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483281 |
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| Product | glycosyl hydrolase family 25 |
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| Protein accession | YP_003374388 |
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| Protein GI | 283783634 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGGAG GACTCGTGGG ACAGATTATC GTACGTGTAT TAGCTGGATT AGTGTCGGCT
GCTACTGCTT TCACTATGAA TGTCGTTGCG CCGCAAAAAT CTTCATCGAT TGAACATGTG
CATGCAAATG TGCGTGCTAA TGTGCATACC AATGTGCATA CCAAAAGTGT TGTTAAGCCT
ATTATTCAAT CACATTCTGG CACTGCGTAT CAAAGCTCGT TTATTGATAA TGAGTATGGT
GCGCATTGGA GTGATGCTGA TGGCACTACG GCTTTTATTG ATGGAAATGA TGATGTGTTC
GTTAATAACG CTAAGGCGGT TATTGATGTT TCTGAGCATC AAAAAGAAAT TGATTGGGAT
GCTGTAAAAG CTTCTGGAGT AGATGGTGCG ATTATTCGTA TTAGCTATGG CTGGGATAAT
GGATATGACA AGCAAGCTTT GCGCAATATT AGCGAATGCA AGCGTCTTGG TATTCCATTC
GGCATTTACA TGTATTCCTA TGCTGAAAAA GCTGAAGATG GTGCTGCTGA AGGTGCCGAC
ATTGTAAATC TTTTGCAGGG TGCTGGAGTA AGTCCTCAAG ATTTAACGTA TCCTGTTTAT
TACGATTTGG AAAAGTGGAG CTGGAGTGGT CATAAACCAC CAACATCACC ATACGTTTAC
CAGGATATTG TTGCTTCCTG GTGGAATCAG TTAGTTTCTG CAGGCTACCA TAAGCTCGGC
GTTTACTCTT ATGCAAATTA TTTGAGAGGA CCATTAAATT CTCAGTATAT TCACGAGCGT
ACAAGCTGGG TTGCTAGCTA CGGTTCTCGC GTAGGCTTCC CTATTTCTAC AGCATTGCGC
GGATGGCAGT ACACTTCCGA CGGCAGCGTT GACGGAATTG ATGGTCGCGT CGATTTGAAC
GCATTCGGCA TGGCTGATGG CGGCGAAATC AATGGTGTTT CTGAGTTTGG TAGCACTATT
ACTAAGCCTA ATTCGTCTAA GCCTTCTGGA GAAACGCGCA ACTATGGTAG CTGGACTGTA
AAGAGTTTTG GTCGTCGTGA AGTATGGACT AATGGAGACA AGAAGTTTGT GCTCCAGTAC
GAGCTTCGCG ATTCATATTA TGCTCATGGC GGTCCTGGTC GTCTTGGTGC TCCTGTTGCT
GATGAGGAGA ATTTGGGTGC TGGCTGGTGG CGTCAGCGTT GCCAGCACGG CGATGTGTTT
ACGCAAGGCC GAGATAAGAA GTACGTAATC CAGTACGAGC TTCGCGATTC ATATTATGCT
CATGGCGGTC CTGGTCGTCT TGGTGCTCCT GTTGCTGATG AGGAGAATTT GGGTGCTGGC
TGGTGGCGTC AGCGTTGCCA GCACGGCGAT GTGTTTACGC AAGGCCGAGA TAAGAAGTAC
GTAATCCAGT ACGAATTGCG CGACTCCTAC TATAAGCACG GAAGCTATTC GCGACTTGGC
TCGCCTATTT CCGACGAGGA AAACATGGGC GGCGGCTGGT GGCGTCAGCG TTGCCAGAAT
GGTGATGTTT GGACGCATGG CAGAGACATT AAGTACGTGA TTCAGTTTGA GTTACGCGAC
TCTTACCAAG GACATCGTGG TGCTGCTTGG CTTGGCGCTC CTGTTGCCGA AGAGGAAAAC
ATGGGCGGCG GCTGGTGGCG TCAGCGTTGC CAGAATGGTG ATGTTTGGAC GCATGGTAGG
GATAAGAAGT TTGTTATCAT GTTTGCTCTT CGTGATTCTT ACTATAGGCA TCGTGGTGCT
GGTTGGCTTG GTGCTCCTGT TGCTGATGAG GAGAATTTGG GTGCTGGCTG GTGGCGTCAG
CGTTGCCAGA ATGGTGATGT TTGGACGCAT GGCACAGACA AGAAGTTCGT TATCATGTTC
AATCTTCGCA AGGATTATTA TGCGCGCGGT GACTTTAAGA AGGTCGGCGC GCCTATTGAA
GATGAACACA ATGATGGCAA TGGCTTATGG CATCAAAAGT GCCAGAATGT TGTGTTAGAA
GCCCACTGA
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| Protein sequence | MSGGLVGQII VRVLAGLVSA ATAFTMNVVA PQKSSSIEHV HANVRANVHT NVHTKSVVKP
IIQSHSGTAY QSSFIDNEYG AHWSDADGTT AFIDGNDDVF VNNAKAVIDV SEHQKEIDWD
AVKASGVDGA IIRISYGWDN GYDKQALRNI SECKRLGIPF GIYMYSYAEK AEDGAAEGAD
IVNLLQGAGV SPQDLTYPVY YDLEKWSWSG HKPPTSPYVY QDIVASWWNQ LVSAGYHKLG
VYSYANYLRG PLNSQYIHER TSWVASYGSR VGFPISTALR GWQYTSDGSV DGIDGRVDLN
AFGMADGGEI NGVSEFGSTI TKPNSSKPSG ETRNYGSWTV KSFGRREVWT NGDKKFVLQY
ELRDSYYAHG GPGRLGAPVA DEENLGAGWW RQRCQHGDVF TQGRDKKYVI QYELRDSYYA
HGGPGRLGAP VADEENLGAG WWRQRCQHGD VFTQGRDKKY VIQYELRDSY YKHGSYSRLG
SPISDEENMG GGWWRQRCQN GDVWTHGRDI KYVIQFELRD SYQGHRGAAW LGAPVAEEEN
MGGGWWRQRC QNGDVWTHGR DKKFVIMFAL RDSYYRHRGA GWLGAPVADE ENLGAGWWRQ
RCQNGDVWTH GTDKKFVIMF NLRKDYYARG DFKKVGAPIE DEHNDGNGLW HQKCQNVVLE
AH
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