| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1171 |
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| Symbol | |
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| ID | 8709259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1373765 |
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| End bp | 1374760 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483261 |
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| Product | putative A/G-specific adenine glycosylase |
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| Protein accession | YP_003374369 |
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| Protein GI | 283783615 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1194] A/G-specific DNA glycosylase |
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| TIGRFAM ID | [TIGR01084] A/G-specific adenine glycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0418958 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACAAG ATTCACAATC TCTCCCCGAA GAACATCTCA CCGAAGAAAC TTCTCAGCCA
TTGCGCGAAT TGGCAACACT TACGCGCGAT AATGTTGCAC TTTTTTGGCA TAGTTGTGCA
CGCGATTTGC CTTGGAGGTT TGGGCGCACT ACCCCTTGGG GTGTGCTTGT GTGTGAAGTA
ATGAGCCAGC AAACGCAAAT GAGCCGTGTT GTACCCTATT GGCTCACTTG GATGCAAACT
TGGCCAGATG CACAATCACT AGCTCACGCT ACGAGTGCTG AAATTATTAC AGCTTGGGGT
CGTCTCGGCT ACCCTCGACG CGCGTTACGT TTACAATCTT GTGCTCAAGT TGTAGCAACA
AGATATCGCA ATAAGCTGCC ATGCACCTAT GAAGAACTTA TTGCCTTGCC AGGTGTAGGC
GATTACACAG CAAGTGCAAT ACTCAGCTTT GCTTATGGCA AGCACATTGC GGTGATTGAT
ACAAATATTC GCCGCGTACT TATGCGCGCT TTTACTGGAA CTGAATCGCA TGGTGGCAGC
ACAACGCAAT CTGACCGCGA GCTTGCTGCC GCAGTATTGC CAGAAGATAA TCATGTTACT
GCTGCCACTG CTAACGCTAC TAACACCACC AACACTACCT GCACTTCATC CGTTTGGAAT
CAGGCAATTA TGGAAATTGG TGCTACCATT TGCACAGCAC GATCTCCGCA ATGCACTGCA
TGTCCTTTGC AAACATGGTG CCGTTTCAAA GCTGCTGGAT TTCCAGGTCT TGGCCGCCAT
ACCCGCCCCC AGCAGCATTT TGCCGGCACT AATCGGCAAG TGCGCGGCAT TATTTTGCAG
GCATTGCGTG AAGCACATAA AAAACAGCAG GTATTGCAAC GTTGCGAGAT CAACAATTTA
TGGTCGAATC AAACACAACT TGGCGAATGC ATTGCTTCGC TCGATCATGA CAGTCTTATC
ACTATATTGC CAGATGGCAC TTTAACATTA CCTTAA
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| Protein sequence | MQQDSQSLPE EHLTEETSQP LRELATLTRD NVALFWHSCA RDLPWRFGRT TPWGVLVCEV
MSQQTQMSRV VPYWLTWMQT WPDAQSLAHA TSAEIITAWG RLGYPRRALR LQSCAQVVAT
RYRNKLPCTY EELIALPGVG DYTASAILSF AYGKHIAVID TNIRRVLMRA FTGTESHGGS
TTQSDRELAA AVLPEDNHVT AATANATNTT NTTCTSSVWN QAIMEIGATI CTARSPQCTA
CPLQTWCRFK AAGFPGLGRH TRPQQHFAGT NRQVRGIILQ ALREAHKKQQ VLQRCEINNL
WSNQTQLGEC IASLDHDSLI TILPDGTLTL P
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